Pairwise Alignments

Query, 338 a.a., type VI secretion system baseplate subunit TssG from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., hypothetical protein from Pseudomonas sp. DMC3

 Score =  223 bits (567), Expect = 7e-63
 Identities = 133/325 (40%), Positives = 187/325 (57%), Gaps = 5/325 (1%)

Query: 10  VDLNSDPAQASPLSLPGNVREYNFYQLVEL-LQKLADINPESEEWERDCRLVFSANPSLG 68
           +D    PA  +   L   +REY+ +Q V L + +L + +P   E +   ++ F ANPSLG
Sbjct: 1   MDTTYGPAAPALSGLTKVIREYSLFQAVLLVIDRLREAHPHLSEDDLYDQVEFQANPSLG 60

Query: 69  FSPSDVMALEARDDE---RWVMLTNFFGLSGAQSPLPGFILEQLVTE-EPGGYKQPFLDF 124
           F  SDV  +E  ++    R  M  N  GL G+ SPLP F  EQ + + E G   + FLD 
Sbjct: 61  FPRSDVDRVEFFEEHGKMRARMRFNLIGLVGSGSPLPAFYGEQALGDSEDGNPTRNFLDL 120

Query: 125 FNNRLINLVYRVWRKYRYYVRFQPGAQDVFSAQLFALVGLGDPDLRGETPINWCKMLAYA 184
           F++RL  L+  +WRKYRY   FQ GA D FSAQLFAL+GLG  ++R    +NW ++L Y 
Sbjct: 121 FHHRLQRLMLPIWRKYRYRASFQSGAIDPFSAQLFALIGLGGDEIRKAKELNWKRLLPYL 180

Query: 185 GTLAGRSRSPQVVAGIIAHCFDLPDVSIRQWVRRRVSIDRSQQLALGKQNARLGMDTVIG 244
           G L+ R+ S  ++  ++ + F   D+ I Q + RRV I   Q+  LG+ N+ LG D V+G
Sbjct: 181 GLLSLRAHSAALIEAVLRYYFKHEDLVIEQCIERRVEILDEQRNRLGRANSVLGEDLVLG 240

Query: 245 ESVIDCSGKFIICIKRLSRSRFADFLPSGKEYQPLCKLVEFILREQMAYDLELAMDEREA 304
           E V D SGKF I I  L   RF +FLP G  YQPLC LV F LR+ + YD+ L + + E 
Sbjct: 241 EHVRDRSGKFRIHITELDWQRFHEFLPIGFGYQPLCALVRFTLRDPLDYDIRLVLRQEEI 300

Query: 305 PLFCLDTRQNIALGWTSFLGQDAAN 329
               +  +    LGWTS+LG++ A+
Sbjct: 301 RELRIGEQNACRLGWTSWLGREKAD 325