Pairwise Alignments

Query, 589 a.a., type VI secretion system baseplate subunit TssF from Vibrio cholerae E7946 ATCC 55056

Subject, 619 a.a., type VI secretion system protein ImpG from Pseudomonas simiae WCS417

 Score =  222 bits (566), Expect = 3e-62
 Identities = 179/631 (28%), Positives = 286/631 (45%), Gaps = 68/631 (10%)

Query: 7   FREELAFLKEQGKEFTEIHPQLSR--FLHGRT-TDPDVERLLEGFAFLTARLREKVEDEF 63
           + +EL  ++E   EF + +P+++    L G    DP VERLLEGFA+LTAR++ K++ E+
Sbjct: 9   YNQELHHVRESAAEFAKEYPKIASRLTLSGMDCADPYVERLLEGFAYLTARVQLKLDAEY 68

Query: 64  PELTHSIINMLWPNYLRPIPSMSVVAFEPDK---SVSEKQVIPRNTQLDSKPVFG----T 116
           P  TH+++ + +P+YL P PSM+VV  + D    S++    +PR+T L  +   G    T
Sbjct: 69  PTFTHNLLEIAYPHYLAPTPSMTVVQLQTDPDEGSLASGFPLPRDTVL--RAALGRETQT 126

Query: 117 ACHFNTCRDVALYPMQCQGVH-------------AEHTREATTIQISLRMLGDMTVGDAK 163
            C + T   V L+P+Q                  A   +    ++++LR   ++      
Sbjct: 127 CCEYRTAHPVTLWPLQVSNAEYFGNPAAVLGRLAASEPKAKAGLRLTLRTGAELPFNSLD 186

Query: 164 LDTVRFYLGGDKYSSQTLYLWLHHYLQKMTIEVQGVEFA--LPADAFSTVGFSSDQALLP 221
           LD +  YL G       LY  L      +     G ++   LP DA  + GF    A +P
Sbjct: 187 LDNLPLYLSGADEQPFRLYEQLLGNACAVFARKPGGDWVERLPQDALRSRGFDDADAAMP 246

Query: 222 YPKNVYDGYRILQEYLSFPEAFHFFDVKGFAKALPKAVSGDFTLRIHFSKTLPA-DTRVR 280
                + GYR+LQEY + P  F F +    ++A+ +    +  L + F +  P+ +  V 
Sbjct: 247 VVARAFQGYRLLQEYFALPHRFLFVEFAELSRAVKRCDGQELELIVLFDRHEPSLEGSVG 306

Query: 281 QDNFQLYCTPVINLFEHDADPIDLTGRRSEYRIVPSSRYPAHYEIFSVDQVVGWQDTQSE 340
              F  +CTP INLF    D I L+ R +E+ ++     P  +EI S+  + G       
Sbjct: 307 AAQFLPFCTPAINLFPKRVDRIHLSDRVNEHHVIADRTRPMDFEIHSLSGITG------- 359

Query: 341 GKRIRGEKRIYSSFESFQHEVERVRHRQALYYRTRVKESIRGD-----------GFDSFI 389
                G ++ +  F + + +  R    QA Y   R    +  D           G ++F+
Sbjct: 360 --HGTGPEQPFLPFYAVR-DPSRYGRDQAYYTVRREPRVLSSDQRRNGPRSTYVGSETFV 416

Query: 390 SFVRGDETLSMGVDEAVSIKLTCTNRLLPLELGVG----DICVATDSSPPFATFKNITVP 445
           S V   ++        + +   CTNR LPL + +G    D  +A   S P  + + +  P
Sbjct: 417 SLVDSRQSPYRHDLRQLGVTALCTNRDLPLFMSIGNGKTDFTLA--DSAPVLSVRCVAGP 474

Query: 446 SQSLRPVLDGSLLWTLISNLSLNYLSLLSKDALSCVLRAYDFRALVDRQAERVARMRLDG 505
           S+        +  W LIS LSLNYLSL  +   +  LR  +   L     +   +++++G
Sbjct: 475 SRPRASHAHDAKAWRLISQLSLNYLSLSEQGQGAAALR--ELLRLYGDSNDAALQLQIEG 532

Query: 506 IVKIESKPVDKILRGLPV-------RGLQSTLYVDQAGFGSEGDLFLFGTVLSHFFALYA 558
           +  + SK V    R LP+       RGL+ TL  D+  F   G +FL G VL  F A Y 
Sbjct: 533 LRDVSSKAV---TRRLPMPGPIVFGRGLEITLEFDENAFRGTG-VFLLGAVLERFLARYV 588

Query: 559 SINSFHELVVVNISNQEKYSWGTQSGMQPLI 589
           SINSF E V+      E   W  + G +P +
Sbjct: 589 SINSFTETVIRTTERGEIMRWKAKPGRRPTL 619