Pairwise Alignments

Query, 589 a.a., type VI secretion system baseplate subunit TssF from Vibrio cholerae E7946 ATCC 55056

Subject, 623 a.a., T6SS component TssF (ImpG/VasA) from Variovorax sp. SCN45

 Score =  240 bits (613), Expect = 1e-67
 Identities = 183/626 (29%), Positives = 298/626 (47%), Gaps = 52/626 (8%)

Query: 6   YFREELAFLKEQGKEFTEIHPQLSRFLHGR---TTDPDVERLLEGFAFLTARLREKVEDE 62
           Y+  EL ++ E G EF + +P+++  L  R    +DP VERLLEGF+FLTAR++ K++ E
Sbjct: 8   YYNRELTYMHELGAEFAQRYPKIAGRLGMRGIEVSDPYVERLLEGFSFLTARIQLKMDAE 67

Query: 63  FPELTHSIINMLWPNYLRPIPSMSVVAFE---PDKSVSEKQVIPRNTQLDSKPVFG--TA 117
           FP  +  ++ +++PN+L P+P+M+VV  +    + S+     +PR+T L  + + G  TA
Sbjct: 68  FPRFSQRLLEVVYPNFLAPLPAMAVVQIDGNLNEGSLKAGYELPRHTILRGRMIKGEQTA 127

Query: 118 CHFNTCRDVALYPMQ-------------CQGVHAEHTREATTIQISLRMLGDMTVGDAKL 164
           C F T   V L+P++                + A   +  + + I +  +G     +  +
Sbjct: 128 CEFRTGHAVTLWPVRIADAGIGPVPAEIAHAMPAVARQAKSALTIRIEAVGGARFSEMPI 187

Query: 165 DTVRFYL-GGDKYSSQTLYLWLHHYLQKMTIEVQGVE---FALPADAFSTVGFSSDQALL 220
           + + F+L G + ++ + L L  HH +  +     G       L  DA    GFS DQALL
Sbjct: 188 ERLEFFLSGAELHALRVLELVAHHAVGTVCRSGPGGNARIVPLGDDAIRHEGFSPDQALL 247

Query: 221 PYPKNVYDGYRILQEYLSFPEAFHFFDVKGFAKALPKAVSGDFTLRIHFSKTLPADTR-- 278
           PY    + GYR+L EY +FP+ + FF V    +A  +A+SG     +       AD    
Sbjct: 248 PYDARSFQGYRLLHEYFAFPDRYLFFSVNKL-RAAAQAMSGSTMEIVILLDRADADLERL 306

Query: 279 VRQDNFQLYCTPVINLFEHDADPIDLTGRRSEYRIVPSSRYPAHYEIFSVDQVVGWQDTQ 338
           V   +F L+CTP+INL    +D I +   + E+  V     P  +EIF+V++V G     
Sbjct: 307 VDAKHFSLFCTPIINLVPRRSDRIPVGPGQHEHHAVIDRTRPRDFEIFTVERVTGHMANG 366

Query: 339 SEGKRIR-------GEKRIYSSFESFQHEVERVRHRQALYYRTRVKESIRGDGFDSFISF 391
           SE +  R        +   + ++ S + E   V  R A    TR   +    G + ++S 
Sbjct: 367 SEEREFRPFLGSFAADDGDFGAYFSLRREPRLVSDR-ARAQGTRTSYT----GSEVYVSL 421

Query: 392 VRGDETLSMGVDEAVSIKLTCTNRLLPLELGVG-DICVATDSSPPFATFKNITVPSQSLR 450
           V   +         +++   CTNR LPL L  G +       S P  + + +  PS+   
Sbjct: 422 VDQHDAPFPHSLRHITLDALCTNRDLPLLLPTGLESDFTLRVSAPVRSIRILRGPSRPYP 481

Query: 451 PVLDGSLLWTLISNLSLNYLSLLSKDALSCVLRAYDFRALVDRQAERVARMRLDGIVKIE 510
            + +G+L W LIS+L LNYLSL   DA        +   L    A+   R ++ G+  + 
Sbjct: 482 ALAEGALTWRLISHLGLNYLSLTDVDAAQGAAALREMLDLYGNLADPSVRRQIQGVRSMA 541

Query: 511 SKPVDKILRGLPV-------RGLQSTLYVDQAGFGSEGDLFLFGTVLSHFFALYASINSF 563
             PV    R LP        RG++  L +D+  F S    +LFG VL  FF+ + S+N+F
Sbjct: 542 LAPV---FRRLPEPGPIVFGRGVEIALKIDEVAF-SGASPYLFGAVLEQFFSRHVSLNAF 597

Query: 564 HELVVVNISNQEKYSWGTQSGMQPLI 589
            E  + ++   E   W  + G +P +
Sbjct: 598 TEFALSSLQRGEIARWTPRVGRRPAV 623