Pairwise Alignments

Query, 589 a.a., type VI secretion system baseplate subunit TssF from Vibrio cholerae E7946 ATCC 55056

Subject, 630 a.a., T6SS component TssF (ImpG/VasA) from Variovorax sp. SCN45

 Score =  219 bits (557), Expect = 3e-61
 Identities = 172/636 (27%), Positives = 286/636 (44%), Gaps = 67/636 (10%)

Query: 7   FREELAFLKEQGKEFTEIHPQLSRFLH---GRTTDPDVERLLEGFAFLTARLREKVEDEF 63
           + +EL + +E   EF    P+++  L        DP VERL+E  AFL+AR+  K++ E+
Sbjct: 9   YEQELRYFRESASEFARAFPKIAHRLGIEGQEVADPYVERLIEATAFLSARVGLKLDAEY 68

Query: 64  PELTHSIINMLWPNYLRPIPSMSVVAFEPDK---SVSEKQVIPRNTQLDSKPVFG--TAC 118
           P  T  ++++++P++L P P+M VV   PD    +++    +PR + L ++   G  T C
Sbjct: 69  PRFTGHLLDIVYPHFLAPTPAMVVVCIAPDPDDANLAAGPTLPRGSGLRARQAVGQNTHC 128

Query: 119 HFNTCRDVALYPMQCQ-------------GVHAEHTREATTIQISLRMLGDMTVGDAKLD 165
            F T   + ++P++ Q               H +       ++I LR    +      LD
Sbjct: 129 EFRTASALRVWPVEVQRAQYFTYAPDLPLNTHPQSRAIRGGLRIGLRATAGLNFSQIALD 188

Query: 166 TVRFYLGGDKYSSQTLYLWLHHYLQKMTIEV-----------QGVEFALPADAFSTVGFS 214
            +  + GG    ++ +   LH       + V            G   +LPA A   VGF 
Sbjct: 189 DLVLHFGG----AEDVAWQLHECALGQPVGVLVRPLSPSGALHGAAQSLPASAIGAVGFE 244

Query: 215 SDQALLPYPKNVYDGYRILQEYLSFPEAFHFFDVKGFAKALPKAVSGDFTLRIHFSKTLP 274
            D+ALLP     + G+R+LQEY +FP+ F F  + G    L      D  + + FS+   
Sbjct: 245 EDEALLPATATGFSGFRLLQEYFAFPQRFQFARIGGLKSVLAAMPVADVEIVLLFSRGDA 304

Query: 275 A-DTRVRQDNFQLYCTPVINLFEHDADPIDLTGRRSEYRIVPSSRYPAHYEIFSVDQVVG 333
           A +  V  DN QL+C P +NLF    D + +T   S++ +VP    P  +E+ +V +V+G
Sbjct: 305 ALEKLVSADNVQLHCVPAVNLFTKRLDRVPMTEGVSQFHLVPDRTRPQDFEVHTVTEVIG 364

Query: 334 WQDTQSEGKRIRGEKR-IYSSFESFQHEVERVRHRQALYYRTR------VKESIRGD--- 383
                ++        R  YS+F        R+ H  A +  TR      V++   G+   
Sbjct: 365 HGTPGTDAAAAEQPFRPFYSAFHG-----SRLSH-PAYFTTTREPRMLSVRQRTEGNRSS 418

Query: 384 --GFDSFISFVRGDETLSMGVDEAVSIKLTCTNRLLPLELGVG-DICVATDSSPPFATFK 440
             G + ++  V   +         +++   CTNR LPL + +G D       S P    +
Sbjct: 419 HIGSEVYMQIVDPQQAPYAASLRQLAVTALCTNRDLPLLMPLGRDNDFDCVDSFPVQRVR 478

Query: 441 NITVPSQSLRPVLDGSLLWTLISNLSLNYLSLLSKDALSCVLRAYDFRALVDRQAERVAR 500
            +  PS+ + PV+   L W ++ +L+LNYLSL             +   L    A+ + +
Sbjct: 479 MVRGPSRPVSPVVSQGLGWRVVDHLALNYLSLSDSTPEQGAAALRETLMLYAVHADEMRQ 538

Query: 501 MRLDGIVKIESKPVDKILRGLPV-------RGLQSTLYVDQAGFGSEGDLFLFGTVLSHF 553
            ++ G++ ++SKPV    R LP+       RGL+ TL VD+  F      FLFG VL+ F
Sbjct: 539 GQVRGLLSVKSKPV---ARRLPMKGPIAFGRGLEVTLEVDKDAFHGH-SAFLFGAVLARF 594

Query: 554 FALYASINSFHELVVVNISNQEKYSWGTQSGMQPLI 589
            A +  +N F E V+      E   W    G + ++
Sbjct: 595 LARHVEVNHFVETVLRIAGRGETMRWRPLCGTRQIL 630