Pairwise Alignments

Query, 589 a.a., type VI secretion system baseplate subunit TssF from Vibrio cholerae E7946 ATCC 55056

Subject, 603 a.a., T6SS component TssF (ImpG/VasA) from Variovorax sp. SCN45

 Score =  231 bits (590), Expect = 5e-65
 Identities = 179/614 (29%), Positives = 300/614 (48%), Gaps = 50/614 (8%)

Query: 5   KYFREELAFLKEQGKEFTEIHPQLSRFLH---GRTTDPDVERLLEGFAFLTARLREKVED 61
           +Y++ EL++L+ QG +F + +P+++  L    G + DP  ERL+E  AFL+AR+   ++ 
Sbjct: 11  QYYKRELSYLRGQGADFAQRYPKVASRLSLHGGESLDPHTERLIESVAFLSARVHRDLDQ 70

Query: 62  EFPELTHSIINMLWPNYLRPIPSMSVVAFEPDKS---VSEKQVIPRNTQLDSKPVF---- 114
           EFP++ +++++ L P+ ++P+PSMSV  F  D +   V+    +PR+T L+++       
Sbjct: 71  EFPDVAYALLDNLCPSLVQPLPSMSVAQFTLDPTQGKVTAGFRVPRHTMLNARTAHPHSA 130

Query: 115 ------GTACHFNTCRDVALYPMQCQGVHAEHTREATTIQISLRMLGDMTVGDAKLDTVR 168
                    C F T  D  L+P++    HA    +A  ++++L         + ++D +R
Sbjct: 131 PGQAPQSRECRFRTAWDTVLWPLRVS--HAAIDTDA-VLRLTLECDAGTDFAELEIDNLR 187

Query: 169 FYLGGDKYSSQTLYLWLHHYLQKMTIEVQGVEF-ALPADAFSTVGFSSDQALLPYPKNVY 227
            +L GD   +  LY  L   ++ + +  +G     LP DA+  VGF+  + +LP P N  
Sbjct: 188 IHLQGDWMLTMPLYDALVAGVKSVGVMPEGGALQMLPPDAWREVGFAEGEEVLPQPANAQ 247

Query: 228 DGYRILQEYLSFPEAFHFFDVKGFAKALPKAVSGDFTLRIHFSKTLPADTRVRQDNFQLY 287
             Y +LQEY +FP  FHFFD+      L +    D   ++   +   A   +  +NFQL 
Sbjct: 248 PAYGLLQEYFAFPRKFHFFDLHHLRARLGRGQRCDLVFQL--DRPTRALRHLDAENFQLG 305

Query: 288 CTPVINLFEHDADPIDLTGRRSEYRIVPSSRYPAHYEIFSVDQVVGWQDTQSEGKRIRGE 347
           CTP++NLF   ++P+ +  R  EY +VP  +  A  E+ S+  V+       +   + G 
Sbjct: 306 CTPIVNLFPRVSEPLVMDQRHYEYMLVPDRQRDATTEVHSIVSVIASDPDADKPVNVPG- 364

Query: 348 KRIYSSFESFQHEVERVRHRQ----ALYYRTRVKESIRGD--GFDSFISFVRGDETLSMG 401
                 F +  H V+  +  Q    A+++  R +  +R +  G D F+SFV   +T S  
Sbjct: 365 ------FAALGH-VDGAQGAQGSQGAVFWAARREPCLRQNIPGTDVFLSFVDQGKTHSRP 417

Query: 402 VDEAVSIKLTCTNRLLPLELGVGDICVATDSSPPFATFKNITVPSQSLRPVLDGSLLWTL 461
               V   L CTNR L  ++ VG   VA   S P  + + +  P+    P L    LW L
Sbjct: 418 AQPVVYAHLLCTNRRLAEQVPVGARLVAEGPSQP-TSVRCLYEPTAQRDPPLGSETLWRL 476

Query: 462 ISNLSLNYLSLLSKDALSCVLRAYDFRALVDRQAERVARMRLDGIVKIESKPV-----DK 516
           +S L+LN+ SL+        LR      L+     R    ++ GI  + ++ V      +
Sbjct: 477 VSLLTLNHQSLVDGSTGREQLRE---MLLLFASDSRRDHAQIRGIAGLSARGVTAHVGTE 533

Query: 517 ILRGLPVRGLQSTL-YVDQAGFGSEGDLFLFGTVLSHFFALYASINSFHELVVVNISNQE 575
             RG   RG Q TL + D A  G  G   +   VL+ FFA+Y S+NSF  LVV +  ++ 
Sbjct: 534 AWRGY-CRGTQVTLEFEDDAFVG--GSPLMMSAVLARFFAMYTSVNSFVRLVVRD-GDEV 589

Query: 576 KYSWGTQSGMQPLI 589
           +  W   +G Q ++
Sbjct: 590 RKQWAPMTGRQVVL 603