Pairwise Alignments

Query, 589 a.a., type VI secretion system baseplate subunit TssF from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., type VI secretion system baseplate subunit TssF from Variovorax sp. OAS795

 Score =  220 bits (561), Expect = 1e-61
 Identities = 178/619 (28%), Positives = 273/619 (44%), Gaps = 45/619 (7%)

Query: 6   YFREELAFLKEQGKEFTEIHPQLSRFLHGR---TTDPDVERLLEGFAFLTARLREKVEDE 62
           Y+ +EL +++E   EF   HP+++R L  R     DP VERL+E F+FL+AR++ K++ E
Sbjct: 8   YYNKELVYMREMAGEFAASHPKIARRLGMRGIEVDDPYVERLIESFSFLSARMQIKLDAE 67

Query: 63  FPELTHSIINMLWPNYLRPIPSMSVVAFEPDKSVSEKQ-----VIPRNTQLDSKPVFG-- 115
           FP  T  ++ +L+PNYL P PSM+V    P  SV E       V+PR+T   ++   G  
Sbjct: 68  FPRFTQRLLEVLYPNYLSPTPSMAVAQLNP--SVKEGDFTRGFVVPRDTAFHARVPAGEQ 125

Query: 116 TACHFNTCRDVALYPMQCQGVH---------------AEHTREATTIQISLRMLGDMTVG 160
           T C F + +DV ++P++                      H +    +++ LR +G++   
Sbjct: 126 TPCEFRSSQDVMMWPIEIVDARLTGAPPDIPALERYVPPHVQVTGALRLRLRTMGELNFS 185

Query: 161 D-AKLDTVRFYLGGDKYSSQTLYLWLH-HYLQKMTIEVQGV---EFALPADAFSTVGFSS 215
               LD V  YL G++  +  L+  LH   +   T E   +      +   A    G + 
Sbjct: 186 ALVGLDRVPVYLQGNEQVASHLFELLHTSAVATFTGEPGNLMHRPHVVTEGALVHEGLAP 245

Query: 216 DQALLPYPKNVYDGYRILQEYLSFPEAFHFFDVKGFAKALPKAVSGDFTLRIHFSKTL-P 274
            Q LLP   N + G+ +L EY + PE F+FF +   A  L +    +  + I  +K   P
Sbjct: 246 GQGLLPLEWNTFHGHNLLHEYFACPERFYFFTLTQLAAGLSRVAGKEAEILILLTKPPGP 305

Query: 275 ADTRVRQDNFQLYCTPVINLFEHDADPIDLTGRRSEYRIVPSSRYPAHYEIFSVDQVVGW 334
               V    F L+CTPV+NLFE   D I+L   + E+ +VP    P  +E+++V  + G 
Sbjct: 306 LGGLVDVGQFALFCTPVVNLFERRTDRIELDTAQPEFHMVPDRSRPLDFEVYAVKALSGQ 365

Query: 335 QDTQSEGKRIRGEKRIYSSFESFQHEVERVRHRQALYYRTRVKESIRGD--GFDSFISFV 392
           Q   +     R   +  +  E        VR    L   T  K   R    G + F+S V
Sbjct: 366 QSQTTAAMEFRPLYQTLNEDEGNYGRYFSVRREPRLASDTARKYGTRTPYIGTEVFVSLV 425

Query: 393 RGDETLSMGVDEAVSIKLTCTNRLLPLEL---GVGDICVATDSSPPFATFKNITVPSQSL 449
             +E         +S+K   TNR LP  +   G  D+ VA   S P +    I  PS   
Sbjct: 426 DQNEAPYADTIRYLSVKALLTNRDLPCLVPRNGKTDLAVA--DSIPVSGVGLIRPPSTPK 483

Query: 450 RPVLDGSLLWTLISNLSLNYLSLLSKDALSCVLRAYDFRALVDRQAERVARMRLDGIVKI 509
            P     + W LI  L  N+L L             D   L       V   +++ +V  
Sbjct: 484 SPFAQREIAWRLIRQLGFNHLPLADMPHRPGAQALRDMLRLFVTTDNDVQLRQIESLVGS 543

Query: 510 ESKPVDKILRG----LPVRGLQSTLYVDQAGFGSEGDLFLFGTVLSHFFALYASINSFHE 565
              P  + L G    +  RG+Q TL VD+ GF      +LFG VL H+ A + SIN F +
Sbjct: 544 RITPATRRLPGAGPLIYGRGVQCTLSVDEEGFSGTSP-YLFGLVLEHYLARHVSINVFTQ 602

Query: 566 LVVVNISNQEKYSWGTQSG 584
            V+ ++       W  + G
Sbjct: 603 TVLESMQRGTVARWPVRMG 621