Pairwise Alignments

Query, 589 a.a., type VI secretion system baseplate subunit TssF from Vibrio cholerae E7946 ATCC 55056

Subject, 588 a.a., conserved protein of unknown function from Pseudomonas putida KT2440

 Score =  569 bits (1467), Expect = e-166
 Identities = 291/589 (49%), Positives = 394/589 (66%), Gaps = 13/589 (2%)

Query: 7   FREELAFLKEQGKEFTEIHPQLSRFLHGRTTDPDVERLLEGFAFLTARLREKVEDEFPEL 66
           F EEL +L E G +F + +PQL+R L    +DPDVERL+E FAFLTA+LR K+ED+ PEL
Sbjct: 7   FSEELRYLHELGNDFAKDNPQLARLLGKAGSDPDVERLMEAFAFLTAKLRLKLEDDLPEL 66

Query: 67  THSIINMLWPNYLRPIPSMSVVAFEPDK-SVSEKQVIPRNTQLDSKPVFGTACHFNTCRD 125
           TH ++ +LWPNYLRP+PS +++ F P K S+S+ Q IP+  +L SKPV    C F TC  
Sbjct: 67  THPMLQILWPNYLRPLPSATIIRFSPRKQSLSQSQHIPKGARLFSKPVDAVPCEFRTCTG 126

Query: 126 VALYPMQCQGVHAEHTREATTIQISLRMLGDM---TVGDAKLDTVRFYLGGDKYSSQTLY 182
           V+L+P +   V A  T +++ ++I L+ L +    T+G A+LD   F+L GD  ++ TLY
Sbjct: 127 VSLHPFEISAVSATQTLDSSVVRIGLQTLVERPLNTLGCARLD---FHLSGDNRTALTLY 183

Query: 183 LWLHHYLQKMTIEVQGVEFALPADAFSTVGFSSDQALLPYPKNVYDGYRILQEYLSFPEA 242
           LW+  YL+ +++ + G    LPA++    GFS ++ALLPYP+NV+DGYRILQEY  FP+ 
Sbjct: 184 LWISQYLKHVSVIMNGEVRRLPANSIGFPGFSPEEALLPYPQNVFDGYRILQEYFVFPKR 243

Query: 243 FHFFDVKGFAKALPKAVSGDFTLRIHFSKTLPADTRVRQDNFQLYCTPVINLFEHDADPI 302
           FHFF + G  K  P        +  HF++ LP   RV  ++F L+CTP +NLF+H A+PI
Sbjct: 244 FHFFSITGLEKLWPAQACPQVGIEFHFTRQLPDTLRVGTEDFSLFCTPAVNLFKHSAEPI 303

Query: 303 DLTGRRSEYRIVPSSRYPAHYEIFSVDQVVGWQDTQ--SEGKRIRGEKRIYSSFESFQHE 360
           DL    ++  + P S   + YEIFSVD+V+  + T   S G+ +R     +  FESF HE
Sbjct: 304 DLASEAAQVELKPRSEAQSAYEIFSVDEVISTRTTTDGSTGEHLR----TFRPFESFAHE 359

Query: 361 VERVRHRQALYYRTRVKESIRGDGFDSFISFVRGDETLSMGVDEAVSIKLTCTNRLLPLE 420
           +E V+ R ALYYR +++ S+RGDG    I+FVR D    +G  E  SI LTCTNR LPL 
Sbjct: 360 IEHVQGRTALYYRCQLEASLRGDGVTHRIAFVRADANSYIGELETASIDLTCTNRDLPLA 419

Query: 421 LGVGDICVATDSSPPFATFKNITVPSQSLRPVLDGSLLWTLISNLSLNYLSLLSKDALSC 480
           LGV DI V T+ +PP AT+ NI  P++  RPVLDG L W LISN+SLNYLSLLS + L  
Sbjct: 420 LGVDDINVLTEVTPPLATYTNICAPTRPYRPVLDGQLQWALISNMSLNYLSLLSVEPLKA 479

Query: 481 VLRAYDFRALVDRQAERVARMRLDGIVKIESKPVDKILRGLPVRGLQSTLYVDQAGFGSE 540
           V+R YDF AL D Q  R    RLDGI ++ ++P+D +++G P+RGL + L +DQA F  E
Sbjct: 480 VIRTYDFAALHDIQQARTTGKRLDGIRELHTQPMDWLIKGQPIRGLHTQLKLDQAAFLCE 539

Query: 541 GDLFLFGTVLSHFFALYASINSFHELVVVNISNQEKYSWGTQSGMQPLI 589
           GDL+LFG VL+HFFALYASINSFH+L V+N +N E Y+W  Q+G QPLI
Sbjct: 540 GDLYLFGCVLAHFFALYASINSFHQLEVINTTNNEHYTWPIQTGKQPLI 588