Pairwise Alignments

Query, 589 a.a., type VI secretion system baseplate subunit TssF from Vibrio cholerae E7946 ATCC 55056

Subject, 606 a.a., conserved protein of unknown function from Pseudomonas putida KT2440

 Score =  299 bits (766), Expect = 2e-85
 Identities = 208/620 (33%), Positives = 327/620 (52%), Gaps = 57/620 (9%)

Query: 6   YFREELAFLKEQGKEFTEIHPQL-SRFL--HGRTTDPDVERLLEGFAFLTARLREKVEDE 62
           Y+ +EL+ L+  G+EF   +P++ SR L       DP  ERL+E F+FL+AR+ +K++DE
Sbjct: 8   YYEKELSHLRFLGQEFAAQYPKIASRLLIEGDNCEDPHTERLIEAFSFLSARVHKKLDDE 67

Query: 63  FPELTHSIINMLWPNYLRPIPSMSVV--AFEPDKSVSEKQVIPRNTQLDSKPVFGTACHF 120
           FPE+  S + +L+P+YLRP PSMS+V  +    + V+E   + R+T++ + PV G  C F
Sbjct: 68  FPEIVESFLEVLYPHYLRPTPSMSIVELSLGRHEKVTEAYRVARHTEMHANPVEGVVCKF 127

Query: 121 NTCRDVALYPMQC-QGVHAEHTREA---------TTIQISLRMLGDMTVGDAKLDTVRFY 170
            TC  V L+P+   Q    E  R A           ++I L   GD   G   ++ +RF+
Sbjct: 128 RTCYPVELWPIAVQQASFTEMERSAFNGHSADLVARLRIRLAATGDALFGQMDMNRLRFF 187

Query: 171 LGGDKYSSQTLYLWLHHYLQKMTI----EVQGVEFALPADAFSTVGFSSDQALLPYPKNV 226
           L G+      LY  L + L K T+    + +  E ALPADA  TVG++ D+ L+ Y +  
Sbjct: 188 LDGEATLMLQLYELLFNNLAKATLSFDDQGRSREVALPADALKTVGYARDEGLVDYSERS 247

Query: 227 YDGYRILQEYLSFPEAFHFFDVKGFAKALPKAVSGDFTLRIHFS------KTLPADTRVR 280
           + GYR+L EY +FP+ F FFD+ GFA+ L         +  +FS      +       + 
Sbjct: 248 FLGYRLLHEYFTFPDKFMFFDLSGFARILQGKAIEQVEVNFYFSDYDLSERLARLTQNIG 307

Query: 281 QDNFQLYCTPVINLFEHDADPIDLTGRRSEYRIVPSSRYPAHYEIFSVDQVVGWQDTQSE 340
           ++NF+L CTP+INLF   A+PI LT  + EY++ P +R     E+ S+D+V         
Sbjct: 308 RNNFKLNCTPIINLFRQQAEPIKLTHTQHEYQVTPDTRLHNAAEVVSIDRV-------RR 360

Query: 341 GKRIRGEKRIYSSFESFQHEVERVRHRQALYYRTRVKESIRGDGFDSFISFVRGDETLSM 400
            +++ G  ++ +    F+   E+  H      R R     +GD     I  V  D  L  
Sbjct: 361 VRKLGGIDQVATCQPFFEPRGEQDPHSSFWVARRR----NQGDATAMSIRVVDRDLELID 416

Query: 401 GVDEAVSIKLTCTNRLLPLELGV----GDICVATDSSPPFATFKNITVPSQSLRPVLDGS 456
              + +SI LTC+NR +PL L      GD  +  +S       + +  P+ ++R  L   
Sbjct: 417 ASSDTLSIGLTCSNRDVPLMLPFGGERGDFTIPANS--VIKDIRCLRKPTATVRVPLGKG 474

Query: 457 LLWTLISNLSLNYLSLLS--KDALSCVLRAYDFRALVDRQAERVARMRLDGIVKIESKPV 514
           L+W LI++LSLN+LSL+S  ++ L  +L  Y++R +         R +++GI  I S+PV
Sbjct: 475 LIWRLIAHLSLNHLSLVSQGREVLLELLSLYNYRNV------SAIRKQINGIKAISSEPV 528

Query: 515 DKILRGLP----VRGLQSTLYVDQAGFGSEGDLFLFGTVLSHFFALYASINSFHELVVVN 570
              + G P    VRG+  TL +D++ F   G +FLFG VL HFF  Y S+NSF +L +  
Sbjct: 529 VARI-GHPRPNFVRGVGITLTLDESQFIGSG-VFLFGRVLDHFFGQYCSMNSFTQLTLRT 586

Query: 571 ISNQEK-YSWGTQSGMQPLI 589
              +++   W  ++G QPL+
Sbjct: 587 QQREKRVVQWPARTGDQPLV 606