Pairwise Alignments

Query, 589 a.a., type VI secretion system baseplate subunit TssF from Vibrio cholerae E7946 ATCC 55056

Subject, 588 a.a., conserved protein of unknown function from Pseudomonas putida KT2440

 Score =  567 bits (1460), Expect = e-166
 Identities = 287/585 (49%), Positives = 393/585 (67%), Gaps = 5/585 (0%)

Query: 7   FREELAFLKEQGKEFTEIHPQLSRFLHGRTTDPDVERLLEGFAFLTARLREKVEDEFPEL 66
           F EEL +L E G +F + +PQL+R L    +DPDVERL+E FAFLTA+LR K+ED+ PEL
Sbjct: 7   FSEELRYLHELGNDFAKDNPQLARLLGKGASDPDVERLMEAFAFLTAKLRLKLEDDLPEL 66

Query: 67  THSIINMLWPNYLRPIPSMSVVAFEPDK-SVSEKQVIPRNTQLDSKPVFGTACHFNTCRD 125
           TH ++ +LWPNYLRP+PS +++ F P + S+S+ Q IP+ ++L SKPV G AC F TC  
Sbjct: 67  THPMLQLLWPNYLRPLPSATIIKFSPVRQSLSQSQRIPKGSRLFSKPVDGVACEFRTCTA 126

Query: 126 VALYPMQCQGVHAEHTREATTIQISLRMLGDMTVGDAKLDTVRFYLGGDKYSSQTLYLWL 185
           V ++P +   V A  T +++ I I L+ L +  +      ++ FYL GD  +++TLYLW+
Sbjct: 127 VNIHPFEIDTVAATQTSDSSVICIGLQSLVERPLNSLGCTSLDFYLSGDARTARTLYLWV 186

Query: 186 HHYLQKMTIEVQGVEFALPADAFSTVGFSSDQALLPYPKNVYDGYRILQEYLSFPEAFHF 245
             YL+ +++ + G    LPA++ +  GFS + ALLPYP+NV+DGYRILQEY +FP+ FHF
Sbjct: 187 SQYLKHVSVTINGEVRRLPANSIAFPGFSPNDALLPYPQNVFDGYRILQEYFAFPQRFHF 246

Query: 246 FDVKGFAKALPKAVSGDFTLRIHFSKTLPADTRVRQDNFQLYCTPVINLFEHDADPIDLT 305
           F V G  K  P   S    L  HF++ LP   RV + +F L+C P +NLF+H A+PIDL+
Sbjct: 247 FSVTGLEKIWPAHDSQQVNLEFHFTRQLPDSLRVGKADFNLFCAPAVNLFQHSAEPIDLS 306

Query: 306 GRRSEYRIVPSSRYPAHYEIFSVDQVVGWQDTQSEGKRIRGEK-RIYSSFESFQHEVERV 364
           G+ +   + P    P  YEIFSVDQV+  + T ++G    GE  R +  FESF HE+E V
Sbjct: 307 GKDAMVPLKPKGTAPHGYEIFSVDQVISTRTT-TDGNT--GEHLRTFRPFESFAHEIEHV 363

Query: 365 RHRQALYYRTRVKESIRGDGFDSFISFVRGDETLSMGVDEAVSIKLTCTNRLLPLELGVG 424
           + R ALYYR +++E + G+G    I+FVR D    +G  E  SI LTCTNR LPL LG+ 
Sbjct: 364 QGRTALYYRCQLEECLHGNGVMHRIAFVRADANSYIGELETASIDLTCTNRDLPLALGID 423

Query: 425 DICVATDSSPPFATFKNITVPSQSLRPVLDGSLLWTLISNLSLNYLSLLSKDALSCVLRA 484
           DI + T+ +PP AT+ N+  P++  RPVLDG L W LISN+SLNYLSLLS + L  V+RA
Sbjct: 424 DINILTELTPPLATYTNLCTPTRPCRPVLDGQLQWALISNMSLNYLSLLSVEPLKAVIRA 483

Query: 485 YDFRALVDRQAERVARMRLDGIVKIESKPVDKILRGLPVRGLQSTLYVDQAGFGSEGDLF 544
           YDF AL D Q  R  R RL+G+  I ++P+D +++G P+RGL + L +DQ  F  EGDL+
Sbjct: 484 YDFMALHDIQQARTTRKRLEGMRDIHTQPMDWLIKGQPIRGLHTRLKLDQTAFLCEGDLY 543

Query: 545 LFGTVLSHFFALYASINSFHELVVVNISNQEKYSWGTQSGMQPLI 589
           LF  VL+HFFALYASINSFH+L V+N +N E Y+W  Q+G QPLI
Sbjct: 544 LFSCVLAHFFALYASINSFHQLEVINTTNNEHYTWPIQTGKQPLI 588