Pairwise Alignments

Query, 589 a.a., type VI secretion system baseplate subunit TssF from Vibrio cholerae E7946 ATCC 55056

Subject, 619 a.a., hypothetical protein from Pseudomonas lactucae CFBP13502

 Score =  221 bits (562), Expect = 9e-62
 Identities = 181/631 (28%), Positives = 288/631 (45%), Gaps = 68/631 (10%)

Query: 7   FREELAFLKEQGKEFTEIHPQLSR--FLHGRT-TDPDVERLLEGFAFLTARLREKVEDEF 63
           + +EL  ++E   EF + +P+++    L G    DP VERLLEGFA+LTAR++ K++ E+
Sbjct: 9   YNQELHHVRESAAEFAKEYPKIASRLTLSGMDCADPYVERLLEGFAYLTARVQLKLDAEY 68

Query: 64  PELTHSIINMLWPNYLRPIPSMSVVAFEPDK---SVSEKQVIPRNTQLDSKPVFG----T 116
           P  TH+++ + +P+YL P PSM+VV  + D    S++    +PR+T L  +   G    T
Sbjct: 69  PTFTHNLLEIAYPHYLAPTPSMTVVQLQTDPDEGSLASGFPLPRDTVL--RAALGRETQT 126

Query: 117 ACHFNTCRDVALYPMQCQGVH-------------AEHTREATTIQISLRMLGDMTVGDAK 163
            C + T   V L+P+Q                  A   +    ++++LR   ++      
Sbjct: 127 CCEYRTAHPVTLWPLQVSSAEYFGNPAAVLGRLAASEPKAKAGLRLTLRTGAELPFNSLD 186

Query: 164 LDTVRFYLGGDKYSSQTLYLWLHHYLQKMTIEVQGVEFA--LPADAFSTVGFSSDQALLP 221
           LD +  YL G       LY  L      +     G ++   LP DA  + GF    A +P
Sbjct: 187 LDNLPLYLSGADEQPFRLYEQLLGNACAVFARKPGGDWVERLPQDALRSRGFDDADAAMP 246

Query: 222 YPKNVYDGYRILQEYLSFPEAFHFFDVKGFAKALPKAVSGDFTLRIHFSKTLPA-DTRVR 280
                + GYR+LQEY + P  + F +    ++A+ +    +  L + F +  P+ +  V 
Sbjct: 247 VVARAFQGYRLLQEYFALPHRYLFVEFAELSRAVKRCDGQELELIVLFDRHEPSLEGSVG 306

Query: 281 QDNFQLYCTPVINLFEHDADPIDLTGRRSEYRIVPSSRYPAHYEIFSVDQVVGWQDTQSE 340
              F  +CTP INLF    D I L+ R +E+ ++     P  +EI S+  + G       
Sbjct: 307 AAQFLPFCTPAINLFPKRVDRIHLSDRVNEHHVIADRTRPMDFEIHSLTGITG------- 359

Query: 341 GKRIRGEKRIYSSFESFQHEVERVRHRQALYYRTRVKESIRGD-----------GFDSFI 389
                G ++ +  F + + +  R    QA Y   R    +  D           G ++F+
Sbjct: 360 --HGTGPEQPFLPFYAVR-DPSRYGRDQAYYTVRREPRVLSSDQRRNGPRSTYVGSETFV 416

Query: 390 SFVRGDETLSMGVDEAVSIKLTCTNRLLPLELGVG----DICVATDSSPPFATFKNITVP 445
           S V   +         + +   CTNR LPL + VG    D  +A DS+P  A  + +  P
Sbjct: 417 SLVDSRQAPYRHDLRQLGVTALCTNRDLPLFMSVGNSKTDFTLA-DSAPVLAV-RCVAGP 474

Query: 446 SQSLRPVLDGSLLWTLISNLSLNYLSLLSKDALSCVLRAYDFRALVDRQAERVARMRLDG 505
           S+        +  W LIS LSLNYLSL  +   +  LR  +   L     +   +++++G
Sbjct: 475 SRPRASHAHDAKAWRLISQLSLNYLSLSEQGQGAGALR--ELLRLYGDSNDAALQLQIEG 532

Query: 506 IVKIESKPVDKILRGLPV-------RGLQSTLYVDQAGFGSEGDLFLFGTVLSHFFALYA 558
           + ++ SK V    R LP+       RGL+ TL  D+  F   G +FL G VL  F A Y 
Sbjct: 533 LREVSSKAV---TRRLPMPGPIVFGRGLEITLEFDENAFRGTG-VFLLGAVLERFLARYV 588

Query: 559 SINSFHELVVVNISNQEKYSWGTQSGMQPLI 589
           SINSF E V+      E   W  + G +P +
Sbjct: 589 SINSFTETVIRTTERGEIMRWKAKPGRRPTL 619