Pairwise Alignments

Query, 589 a.a., type VI secretion system baseplate subunit TssF from Vibrio cholerae E7946 ATCC 55056

Subject, 604 a.a., type VI secretion system baseplate subunit TssF from Erwinia tracheiphila SCR3

 Score =  543 bits (1399), Expect = e-159
 Identities = 279/605 (46%), Positives = 387/605 (63%), Gaps = 17/605 (2%)

Query: 1   MTQDKYFREELAFLKEQGKEFTEIHPQLSRFLHGRTTDPDVERLLEGFAFLTARLREKVE 60
           M  +KYF +E+ +L++  +   +  P L+ FL  + +DPDVERLLEG AFL   LREK++
Sbjct: 1   MALEKYFTDEMDYLRQLARVVAKEKPYLAAFLSEKGSDPDVERLLEGMAFLAGNLREKID 60

Query: 61  DEFPELTHSIINMLWPNYLRPIPSMSVVAFEPDK-SVSEKQVIPRNTQLDSKPVF----- 114
           DEFPELTH ++NMLWPNYLRP+PSM+++ + P K S+S    + R T+L S+PV+     
Sbjct: 61  DEFPELTHGLLNMLWPNYLRPVPSMALIEYTPQKDSISAATRVTRGTRLLSQPVYTHSHD 120

Query: 115 ----------GTACHFNTCRDVALYPMQCQGVHAEHTREATTIQISLRMLGDMTVGDAKL 164
                     G  C F   RD+ L P+    +   ++ E   + +      + ++    L
Sbjct: 121 EPQQRSSSSGGFHCTFTQSRDLWLLPLTLDAITVTNSNEMAIMDMVFSASEENSLNALAL 180

Query: 165 DTVRFYLGGDKYSSQTLYLWLHHYLQKMTIEVQGVEFALPADAFSTVGFSSDQALLPYPK 224
           D +RF LG   Y+S  LY W  +YLQK  + V      L    F   GF  + ALLP+PK
Sbjct: 181 DKLRFGLGESGYNSFQLYFWFSYYLQKAELVVDNSVIELADFDFVPSGFEREDALLPHPK 240

Query: 225 NVYDGYRILQEYLSFPEAFHFFDVKGFAKALPKAVSGDFTLRIHFSKTLPADTRVRQDNF 284
           N   GYRILQEY  FPE F FFDVKG  +      +  F+LR++F++ LP + +VR +  
Sbjct: 241 NAAMGYRILQEYFCFPENFLFFDVKGIPRFADDIRADQFSLRLYFNRPLPPEVKVRCETI 300

Query: 285 QLYCTPVINLFEHDADPIDLTGRRSEYRIVPSSRYPAHYEIFSVDQVVGWQDTQSEGKRI 344
           +L+C P +NLF H ++ I L G +++Y +  S   P  Y+IFSVD+V  W     + + I
Sbjct: 301 RLHCVPAVNLFSHHSESILLDGTQAQYPLQVSHLDPDLYDIFSVDKVQSWLKND-KNQSI 359

Query: 345 RGEKRIYSSFESFQHEVERVRHRQALYYRTRVKESIRGDGFDSFISFVRGDETLSMGVDE 404
            G  R Y+ FESF H++E  R R  LYYR R ++S+   G +  ISFVRGDET  +  DE
Sbjct: 360 HGVLREYAPFESFHHQMEYARGRTKLYYRIRSRQSLFRAGLEHHISFVRGDETQCVLRDE 419

Query: 405 AVSIKLTCTNRLLPLELGVGDICVATDSSPPFATFKNITVPSQSLRPVLDGSLLWTLISN 464
            VS+ LTCTNR +P+ L V DI + TD  P FATF+NIT P+  L PVLDGSL W+LISN
Sbjct: 420 TVSVSLTCTNRKVPISLRVADITIQTDDHPSFATFRNITRPTAPLYPVLDGSLHWSLISN 479

Query: 465 LSLNYLSLLSKDALSCVLRAYDFRALVDRQAERVARMRLDGIVKIESKPVDKILRGLPVR 524
           +SLNYLSLL +DAL  +LR+YD  A+ DRQA R ++ RLDGI++IE+KPVD++ RG+PVR
Sbjct: 480 MSLNYLSLLDRDALCQILRSYDLPAMNDRQAARASQKRLDGILRIETKPVDRLFRGVPVR 539

Query: 525 GLQSTLYVDQAGFGSEGDLFLFGTVLSHFFALYASINSFHELVVVNISNQEKYSWGTQSG 584
           GL +TL+++Q+ F  EG+L+LFG++L+ FF+LYAS+N+FH L V+N SN+E Y W  Q+G
Sbjct: 540 GLATTLWLEQSAFSCEGELYLFGSILARFFSLYASVNAFHLLTVINASNKECYQWPVQTG 599

Query: 585 MQPLI 589
             PLI
Sbjct: 600 QHPLI 604