Pairwise Alignments

Query, 589 a.a., type VI secretion system baseplate subunit TssF from Vibrio cholerae E7946 ATCC 55056

Subject, 625 a.a., type VI secretion system baseplate subunit TssF from Erwinia tracheiphila SCR3

 Score =  189 bits (481), Expect = 2e-52
 Identities = 164/626 (26%), Positives = 281/626 (44%), Gaps = 60/626 (9%)

Query: 6   YFREELAFLKEQGKEFTEIHPQLSRFLHGR---TTDPDVERLLEGFAFLTARLREKVEDE 62
           Y+  EL F+KE   EF   HP+++  L  +     DP VERL+E F FL+AR + K++ E
Sbjct: 8   YYNRELIFMKEMSHEFAIKHPKIAARLGMQGIEVADPYVERLIEAFCFLSARTQIKLDAE 67

Query: 63  FPELTHSIINMLWPNYLRPIPSMSVVAFEP---DKSVSEKQVIPRNTQLDSK--PVFGTA 117
           FP  T  ++++++PNY  P PSM VV   P   +  ++    +P+N+   +K  P   + 
Sbjct: 68  FPNFTQRLLDIVYPNYNSPTPSMGVVQLTPNLKEGDLTRGYRVPKNSAFYTKILPGENSR 127

Query: 118 CHFNTCRDVALYPMQ---------------CQGVHAEHTREATTIQISLRMLGDMTVGDA 162
           C F   ++V L+P++                +     +++    ++I L++  D T    
Sbjct: 128 CEFRNSQEVTLWPIKITEARLTSIPPDLPNLERYRISNSKLKGALRIKLQLQNDQTFSQL 187

Query: 163 K-LDTVRFYLGGDKYSSQTLYLWLHHYLQKMTIEVQGV---EFALPADAFSTVGFSSDQA 218
           + L  +  Y+ GD+     ++  +H     M I   G    +  +     +  G   DQ 
Sbjct: 188 QGLQELPLYIDGDEVVVSHIFELVHTSNVAMIIRSGGTKEQDVIVNQKPLAFEGLKPDQT 247

Query: 219 LLPYPKNVYDGYRILQEYLSFPEAFHFFDVKGFAKALPKAVSGDFTLRIHFSKTLPADT- 277
           LLP   N++ G+ ++ EY +  + F+FF +    +      S +  L I   + LP    
Sbjct: 248 LLPMAWNMFHGHNLIHEYFACRQRFYFFTLTQLEQGFRNNHSNEAELIILLDR-LPQHLI 306

Query: 278 -RVRQDNFQLYCTPVINLFEHDADPIDLTGRRSEYRIVPSSRYPAHYEIFSVDQVVGWQD 336
             V    F L+CTPVINLF    D I++    + + +VP    P  +EIFSV++V+G Q 
Sbjct: 307 GHVDPSRFLLFCTPVINLFSKVVDRIEINRALNSFHVVPDRSRPMDFEIFSVNKVLGQQA 366

Query: 337 TQSEG-------KRIRGEKRIYSSFESFQHEVERVRHRQALYYRTRVKESIRGDGFDSFI 389
            +S+        +    +   +  + S Q E  R +      Y TR        G + F+
Sbjct: 367 ERSDEIVFNPLYQTRHCDYGNFGRYFSIQREA-RTKEVTKRKYDTRTPYL----GTEVFV 421

Query: 390 SFVRGDETLSMGVDEAVSIKLTCTNRLLP-LELGVGDICVATDSSPPFATFKNITVPSQS 448
           S V   E         ++++   TNR LP L        ++   + P +    I  PS  
Sbjct: 422 SLVDQQEAPYSDHIRYLTVEAMVTNRDLPRLISRNSSYDLSMSDAVPISGATFICKPSAP 481

Query: 449 LRPVLDGSLLWTLISNLSLNYLSL------LSKDALSCVLRAYDFRALVDRQAERVARMR 502
             P   G   W LI  LS NYL L      L  ++L  +LR      L    ++  +  +
Sbjct: 482 RAPFAIGESAWRLIRQLSFNYLPLSDMEHSLGGESLRNMLR------LFLNSSDNESISQ 535

Query: 503 LDGIVKIESKPVDKILRG----LPVRGLQSTLYVDQAGFGSEGDLFLFGTVLSHFFALYA 558
           ++ ++  +S+PV + L G    +  RG++ TL VD+ GF      +LFG ++ ++ + +A
Sbjct: 536 VNSLIGCKSEPVTRRLPGDGLLVYGRGVRCTLTVDEEGFSGMSP-YLFGLIMENYLSRHA 594

Query: 559 SINSFHELVVVNISNQEKYSWGTQSG 584
           +IN F E  + ++      SW  + G
Sbjct: 595 AINVFTETQLHSMQRGLVASWQGRPG 620