Pairwise Alignments

Query, 589 a.a., type VI secretion system baseplate subunit TssF from Vibrio cholerae E7946 ATCC 55056

Subject, 598 a.a., hypothetical protein from Azospirillum sp. SherDot2

 Score =  239 bits (609), Expect = 3e-67
 Identities = 179/618 (28%), Positives = 298/618 (48%), Gaps = 60/618 (9%)

Query: 5   KYFREELAFLKEQGKEFTEIHPQLSRFLH---GRTTDPDVERLLEGFAFLTARLREKVED 61
           +++  EL +++  G+ F   +P+++R L     +  DP+VERL+E FAFLT RL+  ++ 
Sbjct: 8   EHYERELLYVRRAGEAFARSYPKIARRLALGPDQAADPNVERLIESFAFLTGRLQLNLDR 67

Query: 62  EFPELTHSIINMLWPNYLRPIPSMSVVAFEP---DKSVSEKQVIPRNTQLDSKPVFGTAC 118
           EFP  T +++ +L P  + P+P M +   EP   +  ++    +PR T L +       C
Sbjct: 68  EFPRFTEALLGILHPQLVAPVPPMGIAQMEPAAGNGQLTGGFTVPRGTALHALAEGSARC 127

Query: 119 HFNTCRDVALYPMQCQGVHAEHTRE---------ATTIQISLRMLGDMTVGDAKLDTVRF 169
            F T  DV L+P+       E T           A+ +++ L    +    +  ++++R 
Sbjct: 128 RFRTAYDVILWPLALTEAAVEPTERYDFIDGGEAASVLRLRLETC-NQVFENLPVESLRL 186

Query: 170 YLGGDKYSSQTLYLWLHHYLQKMTIEVQGVEFALPA------DAFSTVGFSSDQALLPYP 223
           +L G+      L   LH  L    +EV  +    P       D    VGF  DQ +LP+P
Sbjct: 187 FLNGE----PVLNAALHELLLCGMVEVVYLMPGKPPVRLRGDDLLRPVGFEPDQTVLPHP 242

Query: 224 KNVYDGYRILQEYLSFPEAFHFFDVKGFAKALPKA-VSGDFT-LRIHFSKTLPADTRVRQ 281
           ++    Y +LQEY  FP+ F F+D+     ALP+  +SG    + I  S+ LP    VR+
Sbjct: 243 RHAQPAYGLLQEYFEFPQKFDFYDL-----ALPQGRLSGTVVDVLILVSRPLPNRLTVRR 297

Query: 282 DNFQLYCTPVINLFEHDADPIDLTGRRSEYRIVPSSRYPAHYEIFSVDQVVGWQDTQSEG 341
           D F+L CTP++NLF   A+P+ L  +R+ YR+V  +      EI SV +V G +D     
Sbjct: 298 DCFRLGCTPIVNLFTRSAEPVRLNHKRTSYRVVADAMRERTTEIHSVLEVTGMRDAD--- 354

Query: 342 KRIRGEKRIYSSFESFQHEVERVRHRQALYYRTRVKESIRGDGFDSFISFVRGDETLSMG 401
               G +R Y    SFQH       R          +     G D ++S    D   +  
Sbjct: 355 ----GARRTYVPLFSFQHASADADPRGFWLAAREPTQREDMPGTDVYLSLHHLDLDPAEP 410

Query: 402 VDEAVSIKLTCTNRLLPLELGVGDICVATDSSPPFATFKNITVPSQSLRPVLDGSLLWTL 461
            DE + +++ CTNR L  ++  G + +  +++ P A+ + +  P+      + G+  W L
Sbjct: 411 ADETLLVRVACTNRGLAEQVPAGAVLMIEEAA-PIASIRCLNKPTAGRPAPIGGTSAWKL 469

Query: 462 ISNLSLNYLSLLSKD----ALSCVLRAYDFRALVDRQAERVARMRLDGIVKIESKPV--- 514
           +S+LS+N+LSL        AL  +L  Y          + +A+ +L G+  + S+PV   
Sbjct: 470 VSHLSVNHLSLTGDPEGLRALQAILGLY-------APDDVMAQNQLRGLNALSSRPVLHR 522

Query: 515 --DKILRGLPVRGLQSTLYVDQAGFGSEGDLFLFGTVLSHFFALYASINSFHELVVVNIS 572
                 RG  VRGL+ TL +D+  F     L +FG VLS F  LY ++N+F +L + ++ 
Sbjct: 523 IGQDAWRGF-VRGLELTLDIDERNFVGTSPL-VFGGVLSRFLGLYVNVNAFAQLRLRSVQ 580

Query: 573 NQEKY-SWGTQSGMQPLI 589
               + +W   +G QP++
Sbjct: 581 RGGIWKTWPRLAGNQPVL 598