Pairwise Alignments

Query, 589 a.a., type VI secretion system baseplate subunit TssF from Vibrio cholerae E7946 ATCC 55056

Subject, 593 a.a., hypothetical protein from Agrobacterium fabrum C58

 Score =  233 bits (595), Expect = 1e-65
 Identities = 178/610 (29%), Positives = 287/610 (47%), Gaps = 52/610 (8%)

Query: 7   FREELAFLKEQGKEFTEIHPQLS---RFLHGRTTDPDVERLLEGFAFLTARLREKVEDEF 63
           + +EL  L+++   F    P+++   R       DP VERL++ FA+  AR+R+K++DEF
Sbjct: 9   YNDELFALRKRASRFAAAFPKIAGRLRMTGDVADDPHVERLIQSFAYSAARVRQKLDDEF 68

Query: 64  PELTHSIINMLWPNYLRPIPSMSVVAFEPDKSVSEKQVIPRNTQLDSKPVFGTACHFNTC 123
           PEL+ S++  L+P+YL PIPSMSVV F P  +++  Q + R++++ ++PV G +C F T 
Sbjct: 69  PELSDSLLETLYPHYLAPIPSMSVVQFAPSPALATVQTLARHSEILAEPVGGESCRFRTT 128

Query: 124 RDVALYPMQCQGV-----------HAEHTREATTIQISLRMLGDM--TVGDAKLDTVRFY 170
           ++V + P+Q                A     A+ +++SLR       T  +  L  ++ +
Sbjct: 129 QEVQIAPLQIAAATLAGQPIDAPFSASFAGTASCLRLSLRSTAPRGGTFPEMGLTKLQVF 188

Query: 171 LGGDKYSSQTLYLWLHHYLQKMTIEVQGVE---FALPADAFSTVGFSSDQALLPYPKNVY 227
           L      +  LY  L ++   M +     +     LPA      GF+ DQA+LPYP N +
Sbjct: 189 LSAAWQQATALYELLTNHCVGMALARHSEDKEAIFLPAGNLRPSGFTRDQAMLPYPANSF 248

Query: 228 DGYRILQEYLSFPEAFHFFDVKGFAKALPKAVSGDFTLRIHF-SKTLPADTRVRQDNFQL 286
           DGYR+L E+ + P+ F F D+ G    L +   GD  L I+  +     +  V   +F L
Sbjct: 249 DGYRLLTEFFALPQKFLFLDIDG----LHRWSGGDCELYIYLDAADAQLERMVSVKDFVL 304

Query: 287 YCTPVINLFEHDADPIDLTGRRSEYRIVPSSRYPAHYEIFSVDQVVGWQDTQSEGKRIRG 346
             +PVINLF+   +P+ L G R+EYR++P +R     EI++V+ V   Q T   G+    
Sbjct: 305 NASPVINLFKQSCEPLSLDGTRTEYRLLPDARRQRTREIYAVEDV---QLTSRSGQS--- 358

Query: 347 EKRIYSSFESFQHEVERVRHRQALYYRTRVKESIRGDG-FDSFISFVRGDETLSMGVDEA 405
                   E       R +         +++     DG  D+ I+FV         +D  
Sbjct: 359 --------EKTSPFFGRTQRNNGANVFWQIQRRFDDDGSSDTDIAFVDEKRGPLGPLDVV 410

Query: 406 VSIKLTCTNRLLPLELGVG---DICVATDSSPPFATFKNITVPSQSLRPVLDGSLLWTLI 462
            SI   C NR LP +L  G        +  +    +   +  P+ ++R     +  W LI
Sbjct: 411 ASIDTLCINRELPSQLPFGGGHPFLQLSTGNEAVKSVHALMPPTAAIRVNERSAREWRLI 470

Query: 463 SNLSLNYLSLLSKDA--LSCVLRAYDFRALVDRQAERVARMRLDGIVKIESKPVDKILRG 520
           S+L LN+LSL       L  +L  Y FR   +       R  ++ I K+E++     +  
Sbjct: 471 SHLLLNHLSLTDSGGAPLKDILSLYSFRDSPE------TRQLVEAISKVEAQNSHARIGA 524

Query: 521 LPVRGLQSTLYVDQAGFGSEGDLFLFGTVLSHFFALYASINSFHELVVVNISNQEKYS-W 579
             V G   T+  D A        F+F  VL+HFF LY SINSF  L      + +  + W
Sbjct: 525 TMVPGTDITVEFDPALIARPA-AFVFAGVLNHFFGLYTSINSFTRLTATMRGHSKPIARW 583

Query: 580 GTQSGMQPLI 589
             ++  +PL+
Sbjct: 584 PARAADRPLL 593