Pairwise Alignments

Query, 492 a.a., type VI secretion system contractile sheath large subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 497 a.a., T6SS component TssC (ImpC/VipB) from Variovorax sp. SCN45

 Score =  368 bits (945), Expect = e-106
 Identities = 193/466 (41%), Positives = 284/466 (60%), Gaps = 15/466 (3%)

Query: 37  DIAKKGVAAFI-----ENLMGSQHSAEPVNKSLVDQMLVELDKKISAQMDEILHNSQFQA 91
           D AK  V A +     + L  S    + V KS +  M+  +D K++ Q++ I+H+  +Q 
Sbjct: 33  DEAKSAVEAAVLTLAQQALSNSTVIGKDVTKS-IQAMIAAIDAKLTDQVNRIIHHPDYQK 91

Query: 92  MESAWRGLKLFVDRTDFRENNKVEILHVTKDELLEDFEFAPETA--QSGLYKHVYSAGYG 149
           +ESAWRGL   V+ T+  E+ K+ ++ ++K EL ++ +     A  QS ++K +Y   YG
Sbjct: 92  LESAWRGLHYMVNNTETDEHLKIRVMDISKQELAKNLKKFKGAAWDQSPMFKKIYEQEYG 151

Query: 150 QFGGEPVGAIIGNYAFTPSTPDMKLLQYMGALGAMAHAPFISSVGPEFFGIDSFEELPNI 209
           QFGGEP GA++G+Y F  S PD++LL  M  + A AHAPFI+   P    ++S++EL N 
Sbjct: 152 QFGGEPFGALVGDYHFDQSPPDVELLGEMAKIAASAHAPFITGASPNLMQMESWQELANP 211

Query: 210 KDLKSTFESPKYTKWRSLRESEDARYLGLTAPRFLLRVPYDPIENPVKSFNYAENVS-AS 268
           +DL   F +P+Y  WRSLRES+DA+YLGL  PRFL R PY    NPV+ F++ E+ + A 
Sbjct: 212 RDLTKIFLTPEYAGWRSLRESDDAKYLGLCMPRFLARTPYGANTNPVEEFDFEEDTAGAD 271

Query: 269 HEHYLWGNTAFAFATRLTDSFAKYRWCPNIIGPQSGGAVEDLPVHVFES-MGALQSKIPT 327
           H  Y W N A+A AT +  S+  Y W   I G +SGGAVE+LP+H F S  G +  K PT
Sbjct: 272 HGKYAWANAAYAMATNINRSYKLYGWGSRIRGIESGGAVENLPLHTFPSDDGGVDQKCPT 331

Query: 328 EVLITDRKEFELAEEGFIALTMRKGSDNAAFFSANSIQKPKVFPNTKEGKEAETNYKLGT 387
           E+ I+DR+E EL++ G ++L  RK SD AAF  A S+ KP  +    +  +A  N  L  
Sbjct: 332 EIAISDRREAELSKAGLLSLIHRKNSDFAAFIGAQSLHKPAEY----DDPDATANANLAA 387

Query: 388 QLPYMMIINRLAHYVKVLQREQIGAWKERQDLERELNSWIKQYV-ADQENPPADVRSRRP 446
           +LPY+   NR AHY+K + R+++G++KER++++R LN WI  YV  D  N     ++++P
Sbjct: 388 RLPYLFACNRFAHYLKCIVRDKVGSFKEREEMQRWLNKWIMNYVDGDPVNSSETTKAQKP 447

Query: 447 LRAARIEVMDVEGNPGWYQVSLSVRPHFKYMGANFELSLVGRLDQA 492
           L AA + V +VEGNPG+Y     +RPH++  G    L LV +L  A
Sbjct: 448 LAAAEVVVEEVEGNPGYYTSKFFLRPHYQLEGLTVSLRLVSKLPSA 493