Pairwise Alignments

Query, 492 a.a., type VI secretion system contractile sheath large subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 503 a.a., T6SS component TssC (ImpC/VipB) from Variovorax sp. SCN45

 Score =  338 bits (866), Expect = 3e-97
 Identities = 180/481 (37%), Positives = 286/481 (59%), Gaps = 12/481 (2%)

Query: 18  SLLDEIMAQTRIA--PSEEGYDIAKKGVAAFIENLM--GSQHSAEPVNKSLVDQMLVELD 73
           SLLD+I+ + ++   PS+  Y  AKK +      ++  G + S +    +L+++ + E+D
Sbjct: 27  SLLDKIVYEGKMTTEPSQGAY--AKKLIGQLASQILDEGMKTSPDKGVVTLINERVAEID 84

Query: 74  KKISAQMDEILHNSQFQAMESAWRGLKLFVDRTDFRENNKVEILHVTKDELLEDFEFAPE 133
           + ++ Q++ ILH  +FQA+E +WRGL   V  T+   N K+ +L+V+K +LL+D E A +
Sbjct: 85  RLLTDQLNAILHAPEFQALEGSWRGLHDMVFGTETGSNLKLRLLNVSKKDLLKDLETAVD 144

Query: 134 TAQSGLYKHVYSAGYGQFGGEPVGAIIGNYAFTPSTPDMKLLQYMGALGAMAHAPFISSV 193
              S L+K +Y   YG +GG P   +IG+Y F+    D+ LL+ +  + A AHAPFI++ 
Sbjct: 145 HDTSVLFKKIYEEEYGTYGGHPYSLLIGDYYFSRHPQDIALLERVSRVAAAAHAPFIAAA 204

Query: 194 GPEFFGIDSFEELPNIKDLKSTFESPKYTKWRSLRESEDARYLGLTAPRFLLRVPYDPIE 253
            P  F   SF EL   +DL  TFES +   WRS RESED+RY+ L  P +  R+PY    
Sbjct: 205 APALFDFKSFTELGIPRDLSKTFESAELASWRSFRESEDSRYVSLVLPSYAARLPYGAKT 264

Query: 254 NPVKSFNYAENVSAS-HEHYLWGNTAFAFATRLTDSFAKYRWCPNIIGPQSGGAVEDLPV 312
            PV++FNY E+V  S H  YLW N A+    R+T + + Y W   I G + GG V+ +  
Sbjct: 265 IPVENFNYEEDVDGSDHGKYLWANAAYQLGLRITQAHSMYGWTTAIRGVEGGGKVDGMVA 324

Query: 313 HVFES-MGALQSKIPTEVLITDRKEFELAEEGFIALTMRKGSDNAAFFSANSIQKPKVFP 371
           H +++  G +  K PTEV ITDR+E EL++ GFIA+   KGS+ AAFF   ++ KPKV+ 
Sbjct: 325 HAYKTDEGDIALKPPTEVTITDRREKELSDLGFIAIVNSKGSNTAAFFGGQTVNKPKVY- 383

Query: 372 NTKEGKEAETNYKLGTQLPYMMIINRLAHYVKVLQREQIGAWKERQDLERELNSWIKQYV 431
              +   A  N  +  +LPY++  +R AHY+KV+ R++IG+++ + D+++ LN+W+  YV
Sbjct: 384 ---DKDAANANAAVSARLPYILAASRFAHYLKVIVRDKIGSFQTQADMQKHLNNWVANYV 440

Query: 432 ADQENPPADVRSRRPLRAARIEVMDVEGNPGWYQVSLSVRPHFKYMGANFELSLVGRLDQ 491
               + P  ++++ PL  AR++V +V G PG Y+    ++PHF+    +  + LV  L  
Sbjct: 441 LVSPSAPQAMKAKYPLSQARVDVTEVPGKPGSYRAIAFLKPHFQLEELSASIRLVADLPA 500

Query: 492 A 492
           A
Sbjct: 501 A 501