Pairwise Alignments

Query, 492 a.a., type VI secretion system contractile sheath large subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 496 a.a., type VI secretion system contractile sheath large subunit from Escherichia coli ECRC62

 Score =  380 bits (976), Expect = e-110
 Identities = 186/421 (44%), Positives = 278/421 (66%), Gaps = 5/421 (1%)

Query: 50  LMGSQHSAEPVNKSLVDQMLVELDKKISAQMDEILHNSQFQAMESAWRGLKLFVDRTDFR 109
           L  S  +   ++KSL+D  + +LD+KIS Q+D ++H+ +FQ +ES WRG    V RTDFR
Sbjct: 71  LAKSGENVVKLDKSLLDFHIDDLDQKISKQLDAVMHHPEFQKVESLWRGTWFVVQRTDFR 130

Query: 110 ENNKVEILHVTKDELLEDFEFAPETAQSGLYKHVYSAGYGQFGGEPVGAIIGNYAFTPST 169
           +N ++E+L ++K+ L +DF+ +PE  QSGLY+H Y   Y   GGEPV ++I +Y F  S 
Sbjct: 131 KNVRIELLDISKEHLRQDFDDSPEIIQSGLYRHTYIQEYDTPGGEPVASLISSYEFDNSP 190

Query: 170 PDMKLLQYMGALGAMAHAPFISSVGPEFFGIDSFEELPNIKDLKSTFESPKYTKWRSLRE 229
            D+ LL+ +  + A +H PFI SVGP+FF  +S EE+  IKD+ + F+  +Y KW+S R+
Sbjct: 191 QDIALLRNISRVSAASHMPFIGSVGPKFFLKNSMEEVAAIKDIGNYFDRAEYIKWKSFRD 250

Query: 230 SEDARYLGLTAPRFLLRVPYDPIENPVKSFNYAENVSA-SHEHYLWGNTAFAFATRLTDS 288
           ++D+RY+GL  PR L R+PY P   PV+SFNY E V    HE YLW + +FAFA  +  S
Sbjct: 251 TDDSRYVGLVMPRVLGRLPYGPDTVPVRSFNYVEEVKGPDHEKYLWTSASFAFAANMVKS 310

Query: 289 FAKYRWCPNIIGPQSGGAVEDLPVHVFESMGALQSKIPTEVLITDRKEFELAEEGFIALT 348
           F    WC  I GPQ+GGAV DLP+H+++     Q KIP+EV+I + +EFE +  GFI L+
Sbjct: 311 FVNNGWCVQIRGPQAGGAVADLPIHLYDLGTGNQVKIPSEVMIPETREFEFSNLGFIPLS 370

Query: 349 MRKGSDNAAFFSANSIQKPKVFPNTKEGKEAETNYKLGTQLPYMMIINRLAHYVKVLQRE 408
             K  D A FFSANS QKP ++    +  +A  N ++  +LPY+ +++R+AHY+K++QRE
Sbjct: 371 YYKNRDYACFFSANSAQKPALY----DTADATANSRINARLPYIFLLSRIAHYLKIIQRE 426

Query: 409 QIGAWKERQDLERELNSWIKQYVADQENPPADVRSRRPLRAARIEVMDVEGNPGWYQVSL 468
            IG  K+R+ LE ELN+WI+  V +  +P  ++++  PLR  ++ V D+E  PG ++ S+
Sbjct: 427 NIGTTKDRRVLELELNTWIRTLVTEMTDPGDELQASHPLRDGKVIVEDIEDKPGIWKRSI 486

Query: 469 S 469
           S
Sbjct: 487 S 487