Pairwise Alignments

Query, 168 a.a., type VI secretion system contractile sheath small subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 165 a.a., type VI secretion protein from Pseudomonas simiae WCS417

 Score =  154 bits (388), Expect = 9e-43
 Identities = 79/160 (49%), Positives = 110/160 (68%), Gaps = 1/160 (0%)

Query: 1   MSKEGSVAPKERINIKYIPATGDAQAEVELPLKTLVVGDFKGHAEQTPLEERATVTVDKN 60
           M+K+ SVAPKERINI + PA G AQ EVELPLK LV+GDF    +   LE+R  + +DKN
Sbjct: 1   MAKDVSVAPKERINITFKPAVGGAQEEVELPLKLLVLGDFTQREDVRKLEDRKPIAIDKN 60

Query: 61  NFEAVMRESELKITATVKNKLTDDENA-ELPVELNFKSLADFAPDAVASQVPELKKLIEL 119
             + V+ +  L +T  V N+L +D +  EL ++++  S+ DF P  +  QVPEL KL+ L
Sbjct: 61  TLDDVLAKQALSLTLNVPNRLQEDADVEELAIQVSINSMKDFNPANLVEQVPELHKLMAL 120

Query: 120 REALVALKGPLGNIPAFRERLQSLLNSEESREKLLAELNL 159
           REAL+ALKGPLGN P+FR+ ++  L  ++SR ++LAEL L
Sbjct: 121 REALMALKGPLGNTPSFRKAIEQALADDDSRARVLAELGL 160