Pairwise Alignments

Query, 168 a.a., type VI secretion system contractile sheath small subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 190 a.a., T6SS component TssB (ImpB/VipA) from Variovorax sp. SCN45

 Score = 57.8 bits (138), Expect = 1e-13
 Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 18/147 (12%)

Query: 12  RINIKYIPATGDAQAEVELPLKTLVVGDFKG-HAEQTP-LEERATVTVDKNNFEAVMRES 69
           R+ I+Y      ++ +++LP    V+ D  G   +  P L ER  + VD +NF+  M+  
Sbjct: 21  RVQIEYDVEIYGSERKIQLPFVMGVIADLAGKQVDPMPDLAEREFMAVDIDNFDERMKSI 80

Query: 70  ELKITATVKNKLTDDENAELPVELNFKSLADFAPDAVASQVPELKKLIELREALVALKGP 129
           + ++   V N LT D   ++ V++ F S+ DF+P  +A QV  L++L+E R  L      
Sbjct: 81  KPRVAFQVPNTLTGD--GQMNVDITFDSMDDFSPARIARQVDALQQLLEARTEL------ 132

Query: 130 LGNIPAFRERLQSLLNSEESREKLLAE 156
                     L S ++ +   E+L+A+
Sbjct: 133 --------SNLLSYMDGKNGAEQLIAQ 151