Pairwise Alignments

Query, 168 a.a., type VI secretion system contractile sheath small subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 191 a.a., conserved protein of unknown function from Pseudomonas putida KT2440

 Score = 86.3 bits (212), Expect = 3e-22
 Identities = 54/159 (33%), Positives = 84/159 (52%), Gaps = 3/159 (1%)

Query: 12  RINIKYIPATGDAQAEVELPLKTLVVGDFKGHAEQT--PLEERATVTVDKNNFEAVMRES 69
           R++I Y    GDA  + ELP    V+GDF G+  +    L++R  V +D++NF  V++  
Sbjct: 30  RVHITYDVDIGDAIEKKELPFVVGVLGDFSGNPPEPLPKLKDRKFVYIDRDNFNGVLKGI 89

Query: 70  ELKITATVKNKLTDDENAELPVELNFKSLADFAPDAVASQVPELKKLIELREALVALKGP 129
           + ++T  V N L  +   +L VELNF SL DF P  V  QV  L+KL+E+R  L  L+  
Sbjct: 90  KPRLTYRVDNTLAKN-GTQLGVELNFNSLEDFEPQNVVKQVEPLRKLLEVRNKLADLRNK 148

Query: 130 LGNIPAFRERLQSLLNSEESREKLLAELNLLSGQEEPQA 168
           +G      E L  +L + E  + L  E    +  ++P +
Sbjct: 149 MGGNDKLEELLMDVLQNTEKLKTLGKEFGREAEVKDPSS 187