Pairwise Alignments

Query, 168 a.a., type VI secretion system contractile sheath small subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 166 a.a., Type VI secretion system protein TssB from Escherichia coli ECRC62

 Score =  179 bits (454), Expect = 2e-50
 Identities = 99/169 (58%), Positives = 124/169 (73%), Gaps = 9/169 (5%)

Query: 1   MSK--EGSVAPKERINIKYIPATGDAQAEVELPLKTLVVGDFKGHAEQTPLEERATVTVD 58
           MSK  EGSVAP+ERINI Y+P T    AEVELPL  LVVGD     E +PL+ER  V+++
Sbjct: 1   MSKKFEGSVAPRERINISYVPKTDGQTAEVELPLNMLVVGDTGNTQETSPLDERQAVSIN 60

Query: 59  KNNFEAVMRESEL----KITATVKNKLTDDENAELPVELNFKSLADFAPDAVASQVPELK 114
           K+NF AVM E+ +     + AT+K   TDDE   L V LN KSL DF+PD+VA QVPE+ 
Sbjct: 61  KHNFGAVMAEAAIGLNFTVPATLKGSTTDDE---LNVALNIKSLDDFSPDSVARQVPEVN 117

Query: 115 KLIELREALVALKGPLGNIPAFRERLQSLLNSEESREKLLAELNLLSGQ 163
           KL+ELREAL ALKGP+GN+PAFR +LQ+LL +EESRE+LL E+ L+S +
Sbjct: 118 KLLELREALTALKGPMGNLPAFRTQLQALLENEESREQLLKEIGLVSNK 166