Pairwise Alignments

Query, 94 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1419 a.a., type IV secretion protein Rhs from Erwinia amylovora T8

 Score = 43.5 bits (101), Expect = 7e-09
 Identities = 30/74 (40%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 22  VTAGSATVRYDGIPAARLGDPLAPHDKPKHPSHGRAIAAGSGTVMIDGKPAARVGDAVDC 81
           +  GS  V  +G PAA      A  D+         +A GS  V I+G+PAARVGD  +C
Sbjct: 93  ILTGSPNVFINGKPAAIATVSQAGCDRDGPTMQ---MAQGSARVFINGQPAARVGDKTNC 149

Query: 82  GG-VLQGASSVNIG 94
           G  V+ G+ SV IG
Sbjct: 150 GATVMAGSPSVRIG 163



 Score = 34.3 bits (77), Expect = 4e-06
 Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 10/66 (15%)

Query: 7   VGHLGTDHDGFPPTPVTAGSATVRYDGIPAARLGDPLAPHDKPKHPSHGRAIAAGSGTVM 66
           V   G D DG P   +  GSA V  +G PAAR+GD           + G  + AGS +V 
Sbjct: 112 VSQAGCDRDG-PTMQMAQGSARVFINGQPAARVGD---------KTNCGATVMAGSPSVR 161

Query: 67  IDGKPA 72
           I G  A
Sbjct: 162 IGGGTA 167