Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 356 a.a., Ribosomal large subunit pseudouridine synthase D from Xanthobacter sp. DMC5

 Score = 95.1 bits (235), Expect = 4e-24
 Identities = 74/241 (30%), Positives = 120/241 (49%), Gaps = 43/241 (17%)

Query: 351 AQGQDITIVYQDDAIVVVNKPAEFLSVPGV-HVHDSVLTRLKAQFTQA-EGVFAL----- 403
           A+   +TI ++DD ++V++KPA  +  P   H   +++  L      +  G+  +     
Sbjct: 106 AEDLPLTIAFEDDHLIVIDKPAGLVVHPAPGHASGTLVNALLYHCGDSLSGIGGVRRPGI 165

Query: 404 -HRLDMSTSGLLVFALTRRANKQLQKQFISRA----VQKRYVALIEGKLSETQGEIQLPL 458
            HR+D  TSGLLV A +  A+K L  QF        +++ Y+A + G + E +G +  P+
Sbjct: 166 VHRIDKDTSGLLVVAKSDAAHKGLAAQFADHGRTGPLERAYLAFVWG-VPEPKGRVDAPI 224

Query: 459 CGDLDDRPRQKVCWQ-QGKPALTHWETVQVEQNRTRVYLYP------HTGRTHQLRVHCA 511
             D     RQK+  +  G+ A+THWE ++    +T   +         TGRTHQ+RVH A
Sbjct: 225 --DRHPTHRQKMAVRGSGRHAVTHWEVLETFVGKTGAEVASLIECRLETGRTHQIRVHMA 282

Query: 512 HHLGLNAPIVGDDLYG---------LQDK---------RLFLHAEQLSFAHPYTKQPMTF 553
           H      P++GD++YG         L D+         R  LHA +L FAHP T + ++F
Sbjct: 283 H---AGHPLLGDEVYGQGFRTKVSLLPDEARACLAALGRQALHAARLGFAHPVTGEELSF 339

Query: 554 Q 554
           +
Sbjct: 340 E 340