Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 211 a.a., pseudouridine synthase from Pseudomonas simiae WCS417

 Score =  134 bits (338), Expect = 3e-36
 Identities = 87/213 (40%), Positives = 120/213 (56%), Gaps = 14/213 (6%)

Query: 355 DITIVYQDDAIVVVNKPAEFLSVPGV--HVHDSVLTRLKAQ-FTQAEGVFALHRLDMSTS 411
           +I I+YQDDA++VVNKP   LSVPG      D ++TRL+   + +A  V   HRLD  TS
Sbjct: 5   NIHILYQDDAVLVVNKPTLLLSVPGRADDNKDCLITRLQENGYPEARIV---HRLDWETS 61

Query: 412 GLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRPRQKVC 471
           G+++ A     +++L +QF  R  +K Y AL  G+     G I LPL  D   +PR  V 
Sbjct: 62  GIILLARDADTHRELSRQFHDRETEKAYTALAWGQPELDSGSIDLPLRYDPPTKPRHVVD 121

Query: 472 WQQGKPALTHWETVQVEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDLYGLQD- 530
            + GK ALT W+ ++   +  RV L P TGR+HQLRVH    L +  P++GD LY  +  
Sbjct: 122 HEFGKHALTFWKVLERCGDWCRVELTPITGRSHQLRVHM---LSIGHPLLGDGLYAHEQA 178

Query: 531 ----KRLFLHAEQLSFAHPYTKQPMTFQVDADF 559
                RL LHA  LSF HP + + + F+  A F
Sbjct: 179 LAAWPRLCLHASMLSFTHPQSGERLRFECPAPF 211