Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 223 a.a., LSU rRNA pseudouridine(746) synthase (EC 5.4.99.29) @ tRNA pseudouridine(32) synthase (EC 5.4.99.28) from Variovorax sp. SCN45

 Score =  122 bits (306), Expect = 1e-32
 Identities = 84/216 (38%), Positives = 111/216 (51%), Gaps = 22/216 (10%)

Query: 359 VYQDDAIVVVNKPAEFLSVPG--VHVHDSVLTRLKAQFTQAEGVFALHRLDMSTSGLLVF 416
           V++DD ++  +KPA  L VPG      D +  R   Q+  A     +HRLDM TSGL+V 
Sbjct: 10  VHEDDHLLAFDKPAGLLCVPGRGEDKQDCLSARALLQWPDA---LIVHRLDMGTSGLVVM 66

Query: 417 ALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQ--GEIQLPLCGDLDDRPRQKVCWQQ 474
           A      + L   F  R V KRY A+++G L +      I  PL  D   RP QK+    
Sbjct: 67  ARGIEMQRALSAAFAERRVHKRYEAVVDGTLPQLDEWSVIDAPLMADWPRRPLQKID-PA 125

Query: 475 GKPALTHWETVQ------VEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDLYG- 527
           GKP++T W+ +            T V L P TGR+HQLRVH    L +  PI+GD LYG 
Sbjct: 126 GKPSVTRWKAISAWSGEPASSAATHVLLEPLTGRSHQLRVHL---LSIGHPILGDALYGD 182

Query: 528 --LQDK--RLFLHAEQLSFAHPYTKQPMTFQVDADF 559
             LQ +  RL LHA +L F HP T + + F+   DF
Sbjct: 183 AALQARAPRLLLHASELGFVHPVTMEELRFRRTPDF 218