Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 245 a.a., RNA pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

 Score =  161 bits (408), Expect = 2e-44
 Identities = 94/218 (43%), Positives = 128/218 (58%), Gaps = 13/218 (5%)

Query: 349 NPAQGQDITIVYQDDAIVVVNKPAEFLSVPG--VHVHDSVLTRLKAQFTQAEGVFALHRL 406
           NP +   I ++Y+D+ I+  NKP+  LSVPG  V  +DS+  RL         V  +HRL
Sbjct: 7   NPPKDPWIDVIYEDEHIIAANKPSGLLSVPGRPVEHYDSMWARL---VDYCPDVKVVHRL 63

Query: 407 DMSTSGLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRP 466
           DMSTSGL++FA  +     L+KQF  R   K Y A + G + + +GE+ LPLC D  +RP
Sbjct: 64  DMSTSGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDWPNRP 123

Query: 467 RQKVCWQQGKPALTHWETVQVEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDLY 526
           +QKVC+++G+ +LT ++ V+ E+  T V L P TGR+HQLRVH      L  PIVGDDLY
Sbjct: 124 KQKVCFEEGRDSLTRYQVVKREEKTTVVRLIPITGRSHQLRVHMQ---SLGHPIVGDDLY 180

Query: 527 GLQD-----KRLFLHAEQLSFAHPYTKQPMTFQVDADF 559
              +      RL LHA +L F HP +    T  V  DF
Sbjct: 181 APPEAVEFADRLQLHAAELCFYHPRSHWLRTLFVPCDF 218