Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

 Score =  102 bits (254), Expect = 2e-26
 Identities = 77/224 (34%), Positives = 110/224 (49%), Gaps = 26/224 (11%)

Query: 351 AQGQDITIVYQDDAIVVVNKPAEFLSVPGVHVHD-SVLTRLKAQFTQAEGV---FALHRL 406
           AQ   + IVY+DD I+V+NKP +F+  PG    D +VL  L   ++    V     +HRL
Sbjct: 79  AQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFHYSPIAEVPRAGIVHRL 138

Query: 407 DMSTSGLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRP 466
           D  T+GL+V A T  A  +L +    R V + Y A++ G ++   G I  P+      R 
Sbjct: 139 DKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMT-AGGMIDKPIGRHSTKRT 197

Query: 467 RQKVCWQQGKPALTHWETVQVEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDLY 526
              V    GK A+TH+   +  +  TR+ L   TGRTHQ+RVH A+   L  P++GD  Y
Sbjct: 198 LMSVS-PMGKHAVTHYRVAEHFREHTRLRLRLETGRTHQIRVHMAY---LQHPLLGDTAY 253

Query: 527 G----------------LQD-KRLFLHAEQLSFAHPYTKQPMTF 553
           G                ++D  R  LHA  L F HP T + + F
Sbjct: 254 GGRARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEF 297