Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 316 a.a., LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) from Sphingobium sp. HT1-2

 Score =  104 bits (260), Expect = 4e-27
 Identities = 73/224 (32%), Positives = 113/224 (50%), Gaps = 24/224 (10%)

Query: 351 AQGQDITIVYQDDAIVVVNKPAEFLSVPGVHVHDSVLTRL-----KAQFTQAEGVFA--- 402
           AQ   + IV++D  ++VV+KPA  +  P     D  L          Q +   GV     
Sbjct: 79  AQDIPLDIVHEDADLIVVDKPAGLVVHPAAGNLDGTLVNALLHHCDGQLSGIGGVARPGI 138

Query: 403 LHRLDMSTSGLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDL 462
           +HR+D  TSGLLV A + +A++ L +QF   ++ + Y A++ G  +   G +   +    
Sbjct: 139 VHRIDKDTSGLLVVAKSDKAHEGLARQFKDHSIDRLYAAIVYGIPAPGSGTVDAWIGRSD 198

Query: 463 DDRPRQKVCWQ-QGKPALTHWETVQVEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIV 521
            DR +  V  + +GK A+TH+  ++  +    V     TGRTHQ+RVH AH   L  P++
Sbjct: 199 ADRKKMAVHREGRGKHAVTHYRVMERLRGAAMVECRLETGRTHQVRVHMAH---LGHPLI 255

Query: 522 GDDLYG------------LQDKRLFLHAEQLSFAHPYTKQPMTF 553
           GD +YG            L  KR  LHA++L F HP T++P+ F
Sbjct: 256 GDPVYGRDRKGFKSILETLGFKRQALHAKRLGFIHPVTEEPLAF 299