Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 452 a.a., LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) from Sphingobium sp. HT1-2

 Score = 95.1 bits (235), Expect = 5e-24
 Identities = 67/199 (33%), Positives = 98/199 (49%), Gaps = 14/199 (7%)

Query: 358 IVYQDDAIVVVNKPAEFLSVPGVHVHDSVLTRLKAQFTQAEGVFAL-HRLDMSTSGLLVF 416
           ++++D   +V+NKP    +  G    + V   L      AE    L HRLD  TSG L+ 
Sbjct: 186 VIHRDKQAIVINKPPGLATQGGTKTDEHVDRLLDGLIFDAESRPKLVHRLDKDTSGALLL 245

Query: 417 ALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDL-DDRPRQKVCWQQG 475
           A + R+     K F SR  +K Y A++ G  S   G I+LP+         +  V  ++G
Sbjct: 246 ARSSRSAAHFAKAFSSRTARKVYWAIVIGVPSIDDGMIELPITKQPGTGGEKMHVDEEEG 305

Query: 476 KPALTHWETVQVEQNRTR-VYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDLYGLQD---- 530
            PA T +  ++   NR   V L P+TGRTHQLRVH A    +  P+VGD  YG +D    
Sbjct: 306 LPARTRYRVIERAGNRAAWVELQPYTGRTHQLRVHMA---AIGHPLVGDGKYGGKDSFLS 362

Query: 531 ----KRLFLHAEQLSFAHP 545
               +++ LHA ++   HP
Sbjct: 363 GSISRKMHLHARRIRVDHP 381