Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 211 a.a., 23S rRNA (746) and tRNA (32) pseudouridine synthase from Pseudomonas putida KT2440

 Score =  135 bits (341), Expect = 1e-36
 Identities = 85/212 (40%), Positives = 118/212 (55%), Gaps = 12/212 (5%)

Query: 355 DITIVYQDDAIVVVNKPAEFLSVPG--VHVHDSVLTRLKAQFTQAEGVFALHRLDMSTSG 412
           ++ I+++D AI+V+NKP   LSVPG      D ++TRL  Q         +HRLD  TSG
Sbjct: 5   NVQILFEDAAILVINKPTLLLSVPGRAEDNKDCLITRL--QENGYPDALIVHRLDWETSG 62

Query: 413 LLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRPRQKVCW 472
           +++ A    ++++L +QF  R  +K Y AL  G+ +   G I LPL  D   +PR  V  
Sbjct: 63  IILLARDADSHRELSRQFHDRETEKAYTALCWGQPALDSGSIDLPLRYDPPTKPRHVVDH 122

Query: 473 QQGKPALTHWETVQVEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDLYG----- 527
           +QGK ALT W  V+   +  RV L P TGR+HQLRVH    L +  P++GD LY      
Sbjct: 123 EQGKHALTFWRIVERCGDHCRVELTPITGRSHQLRVHM---LSIGHPLLGDRLYANPQAL 179

Query: 528 LQDKRLFLHAEQLSFAHPYTKQPMTFQVDADF 559
              +RL LHA  LSF HP + Q + F+  A F
Sbjct: 180 AAHERLCLHASMLSFTHPVSGQRLKFECPAPF 211