Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 94.0 bits (232), Expect = 8e-24
 Identities = 70/215 (32%), Positives = 105/215 (48%), Gaps = 15/215 (6%)

Query: 352 QGQDITIVYQDDAIVVVNKPAEFLSVPGV-HVHDSVLTRLKAQFTQAEGV---FALHRLD 407
           Q   + +VY+D  ++V+ KPA  +  P   H   ++L  L A    A  +     +HRLD
Sbjct: 96  QAMALDVVYEDADLLVIQKPAGLVVHPAAGHWTGTLLNGLLAHHAGAASLPRAGIVHRLD 155

Query: 408 MSTSGLLVFALTRRANKQLQKQFISRAVQKRYVALIEGK-LSETQGEIQLPLCGDLDDRP 466
             TSGL++   +R+A + L +   +R V ++Y+AL  G+     +  +  P+  D+ +R 
Sbjct: 156 KDTSGLMLVGKSRQAVEALVRAIAAREVNRQYLALAHGRWQGAAEKGVDQPIGRDVHNRL 215

Query: 467 RQKVCWQQ---GKPALTHWETVQVEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGD 523
           R  V       GK A T    +        V    HTGRTHQ+RVH A    L  P+V D
Sbjct: 216 RMAVVRPDTGIGKAAQTTIRLLDTSDQACLVACKLHTGRTHQIRVHMA---WLGHPLVAD 272

Query: 524 DLYGLQD----KRLFLHAEQLSFAHPYTKQPMTFQ 554
            LYG +      R  LHA +LS  HP T +P+ F+
Sbjct: 273 TLYGGRALWGIDRQALHAARLSLRHPITGEPLAFR 307