Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 215 a.a., Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  130 bits (326), Expect = 6e-35
 Identities = 84/218 (38%), Positives = 117/218 (53%), Gaps = 20/218 (9%)

Query: 356 ITIVYQDDAIVVVNKPAEFLSVPG--VHVHDSVLTRLKAQFTQAEGVFALHRLDMSTSGL 413
           +  +++DD ++V++KPA  L+VPG      D +  R +A++  A     +HRLDM+TSGL
Sbjct: 4   LNTIHEDDQMIVLDKPAGLLAVPGRGPDKQDCLSARAQARWPDA---LVVHRLDMATSGL 60

Query: 414 LVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGE-----IQLPLCGDLDDRPRQ 468
           +V A    A +QL + F  R V KRY A++ G L     +     I LPL  D  +RPR 
Sbjct: 61  VVMARGIEAQRQLSRAFEQRQVHKRYTAVVAGTLHNPVHDNGWNTIDLPLTIDWPNRPRS 120

Query: 469 KVCWQQGKPALTHWETV--QVEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDLY 526
            V  + GKP++T W       + + TR+ L P TGRTHQLRVH      +  PI+GD LY
Sbjct: 121 IVSAELGKPSVTRWRLAGPATDDHTTRLELEPVTGRTHQLRVHLQ---AIGHPILGDMLY 177

Query: 527 GLQDK-----RLFLHAEQLSFAHPYTKQPMTFQVDADF 559
              ++     RL LHA QLS  HP     M F   + F
Sbjct: 178 ATPEQQARAPRLLLHAHQLSLPHPQHGATMDFHSTSPF 215