Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 329 a.a., Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 98.2 bits (243), Expect = 4e-25
 Identities = 76/238 (31%), Positives = 109/238 (45%), Gaps = 35/238 (14%)

Query: 348 SNPAQGQDITIVYQDDAIVVVNKPAEFLSVPGVHVHDSVLTRLKAQFTQAEGVFALHRLD 407
           ++PA  ++  +V++D+A + ++KPA      G  V   V+ +++    QA  +  +HRLD
Sbjct: 84  AHPAPAREFPVVFEDEAFLAIDKPAGVAVHGGSGVSFGVIEQMRQARPQARLLELVHRLD 143

Query: 408 MSTSGLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDL--DDR 465
             TSGLL+ A  + A K LQ QF  R   K Y+AL++G        +  PL   L  D  
Sbjct: 144 RETSGLLLIAKKKSALKALQDQFRERETGKTYLALVKGVWPARLKVLDQPLHKYLLPDGE 203

Query: 466 PRQKVCWQQGKPALTHWETVQVEQNRTRVYLYP-----------------HTGRTHQLRV 508
            R +V        +     V+V Q   RV   P                  TGRTHQ+RV
Sbjct: 204 RRVRVTTPDDPDGMCSVTLVKVAQ---RVPAPPGLEAGAPEGFSLLEVTIKTGRTHQIRV 260

Query: 509 HCAHHLGLNAPIVGDDLYG----------LQDKRLFLHAEQLSFAHPYTKQPMTFQVD 556
           H +       PI GDD YG          +  KR+FLHA +L   HP TK P+  Q +
Sbjct: 261 HLS---SAGHPIAGDDKYGDFELNRQLARIGLKRMFLHAWRLRLTHPVTKSPLELQAE 315