Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 262 a.a., tRNA pseudouridine(65) synthase TruC from Pectobacterium carotovorum WPP14

 Score = 96.7 bits (239), Expect = 1e-24
 Identities = 76/233 (32%), Positives = 112/233 (48%), Gaps = 40/233 (17%)

Query: 356 ITIVYQDDAIVVVNKPAEFLSVPGVHVHDSVLTRLKAQFTQ-------AEGVFALHRLDM 408
           + I+YQD+ +V VNKP+ +L      VH S L R +             + V+ +HRLD 
Sbjct: 2   LEIIYQDEHLVAVNKPSGWL------VHRSWLDRKEKVVVMQTVRDQIGQHVYTVHRLDR 55

Query: 409 STSGLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRPRQ 468
            TSG+L+ AL+    + L +QF S  +QK Y A++ G + +  G I   L  +LD    +
Sbjct: 56  PTSGVLLLALSSEVARALSQQFESHQMQKTYHAVVRGYVLD-DGVIDYALTEELDKIADK 114

Query: 469 KVCWQQG-KPALTHWET-------VQVEQNRTRVY----LYPHTGRTHQLRVHCAHHLGL 516
                +  +PA+TH+ +       V + +  T  Y    L P TGR HQLR H  H   +
Sbjct: 115 FTNPDKAPQPAVTHYRSLAQAEMPVAIGRYPTARYSLMELKPQTGRKHQLRRHMTH---I 171

Query: 517 NAPIVGDDLYG-----------LQDKRLFLHAEQLSFAHPYTKQPMTFQVDAD 558
           + PI+GD  +G               RL LHA +L   HP + QP+T Q   D
Sbjct: 172 HHPIIGDTAHGDLRHNRGMESYFSCGRLMLHASELQLNHPVSGQPLTLQARWD 224