Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 217 a.a., bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA from Pectobacterium carotovorum WPP14

 Score =  168 bits (426), Expect = 2e-46
 Identities = 97/219 (44%), Positives = 136/219 (62%), Gaps = 14/219 (6%)

Query: 349 NPAQGQDITIVYQDDAIVVVNKPAEFLSVPG--VHVHDSVLTRLKAQFTQAEGVFALHRL 406
           NP     + I+YQD  I+VVNKP+  LSVPG      DSV++R++A +  AE V   HRL
Sbjct: 5   NPPTDPWLHILYQDQHIMVVNKPSGLLSVPGRAPEHKDSVMSRIQADYPTAESV---HRL 61

Query: 407 DMSTSGLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRP 466
           DM+TSG++  ALT+ A ++L++QF  R  +K Y+A + G +++ +G I LPL  D  +RP
Sbjct: 62  DMATSGVIAVALTKAAERELKRQFREREPKKSYLARVWGHMAQDEGVIDLPLICDWPNRP 121

Query: 467 RQKVCWQQGKPALTHWETVQVE-QNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDL 525
           +QKVC++ GK A T ++ +  +    TRV L P TGR+HQLRVH    L L  PI+GD  
Sbjct: 122 KQKVCFETGKAAQTEYQVLSRDADGTTRVKLMPITGRSHQLRVHL---LALGHPILGDGF 178

Query: 526 YGLQD-----KRLFLHAEQLSFAHPYTKQPMTFQVDADF 559
           Y   D      RL LHA++L+  HP    PM F+ +ADF
Sbjct: 179 YAHPDAKALAPRLLLHAQELAITHPAFNTPMHFRCEADF 217