Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 219 a.a., pseudouridine synthase for 23S rRNA (position 746) and tRNAphe(position 32) (NCBI) from Escherichia coli BW25113

 Score =  181 bits (460), Expect = 2e-50
 Identities = 106/219 (48%), Positives = 139/219 (63%), Gaps = 14/219 (6%)

Query: 349 NPAQGQDITIVYQDDAIVVVNKPAEFLSVPG-VHVH-DSVLTRLKAQFTQAEGVFALHRL 406
           NP Q   + I+YQDD I+VVNKP+  LSVPG +  H DSV+TR++  + QAE V   HRL
Sbjct: 7   NPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV---HRL 63

Query: 407 DMSTSGLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRP 466
           DM+TSG++V ALT+ A ++L++QF  R  +K+YVA + G  S  +G + LPL  D  +RP
Sbjct: 64  DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP 123

Query: 467 RQKVCWQQGKPALTHWETVQ-VEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDL 525
           +QKVC++ GKPA T +E V+    N  RV L P TGR+HQLRVH    L L  PI+GD  
Sbjct: 124 KQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHM---LALGHPILGDRF 180

Query: 526 YGLQD-----KRLFLHAEQLSFAHPYTKQPMTFQVDADF 559
           Y   +      RL LHAE L+  HP     MTF+  ADF
Sbjct: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219