Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 325 a.a., 23S rRNA pseudouridine(1911/1915/1917) synthase RluD from Erwinia tracheiphila SCR3

 Score = 97.1 bits (240), Expect = 9e-25
 Identities = 73/218 (33%), Positives = 105/218 (48%), Gaps = 26/218 (11%)

Query: 351 AQGQDITIVYQDDAIVVVNKPAEFLSVPGVHVHD-SVLTRLKAQFTQAEGV---FALHRL 406
           AQ   + IVY+DD I+++NKP   +  PG    D +VL  L  ++     V     +HRL
Sbjct: 79  AQDIALDIVYEDDDILIINKPHNLVVHPGAGNPDGTVLNALLHRYPAICDVPRAGIVHRL 138

Query: 407 DMSTSGLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRP 466
           D  T+GL+V A T  A   L +    R + + Y A+  G+++   G +  P+      R 
Sbjct: 139 DKDTTGLMVVAKTVPAQTHLVESLQLREITREYEAVAIGRMT-AGGSVDEPISRHSTKRT 197

Query: 467 RQKVCWQQGKPALTHWETVQVEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDLY 526
              V    GKPA TH+  ++  +  TR+ L   TGRTHQ+RVH +H   +N P+VGD LY
Sbjct: 198 HMAV-HPMGKPATTHYRIMEHFRAHTRMRLRLETGRTHQIRVHMSH---INHPLVGDPLY 253

Query: 527 GLQDK-----------------RLFLHAEQLSFAHPYT 547
           G + +                 R  LHA  L   HP T
Sbjct: 254 GGRPRPPKGASDNFISALRKFDRQALHATMLRLYHPIT 291