Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 320 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Erwinia tracheiphila SCR3

 Score =  106 bits (264), Expect = 2e-27
 Identities = 74/215 (34%), Positives = 107/215 (49%), Gaps = 14/215 (6%)

Query: 355 DITIVYQDDAIVVVNKPAEFLSVPGVHVHDSVLTRLKAQFTQAEGVFALHRLDMSTSGLL 414
           D  I+++DD ++V+NKP+      G  +   V+  L+A    A  +  +HRLD  TSG+L
Sbjct: 92  DGAILFEDDHLLVLNKPSGTAVHGGSGLSFGVIEGLRALRPDARFLELVHRLDRDTSGIL 151

Query: 415 VFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGD-LDDRPRQKVCWQ 473
           + A  R A + L +Q   + +QK Y+AL++G+       +Q PL  + L    R      
Sbjct: 152 LVAKKRSALRSLHEQLREKGMQKDYLALVKGQWPSHLKTVQTPLLKNILQSGERVVRVSS 211

Query: 474 QGKPALTHWETVQVEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDLYGLQD--- 530
           +GKP+ T ++  +     T V   P TGRTHQ+RVH  H      PI  DD YG +    
Sbjct: 212 EGKPSETRFKVEERYAYATLVKASPVTGRTHQIRVHTLH---AGHPIAFDDRYGEKSFDM 268

Query: 531 -------KRLFLHAEQLSFAHPYTKQPMTFQVDAD 558
                  KRLFLHA  L F HP T + M  +   D
Sbjct: 269 QLAGSGLKRLFLHALALRFTHPATGEVMRVKAPLD 303