Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 259 a.a., tRNA pseudouridine(65) synthase TruC from Erwinia tracheiphila SCR3

 Score =  101 bits (251), Expect = 4e-26
 Identities = 77/234 (32%), Positives = 109/234 (46%), Gaps = 42/234 (17%)

Query: 356 ITIVYQDDAIVVVNKPAEFLSVPGVHVHDSVLTRLKAQFTQA-------EGVFALHRLDM 408
           + I+YQD  +V VNKPA +L      VH S L R ++ F          + V+ +HRLD 
Sbjct: 2   LEIIYQDQWLVAVNKPAGWL------VHRSWLDRHESVFVMQTLRDQIDQHVYTVHRLDR 55

Query: 409 STSGLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRPRQ 468
            TSG+L+ AL+    +QL +QF    +QK Y A++ G LS  +  +   L   L D+   
Sbjct: 56  PTSGVLLLALSSDVARQLSEQFAQHQLQKTYHAVVRGWLSGEE-SLDYALTEQL-DKIAD 113

Query: 469 KVCWQQGKP--ALTHWETVQVEQ-----------NRTRVYLYPHTGRTHQLRVHCAHHLG 515
           K    +  P  A+THW ++   +             T V L+P +GR HQLR H  H   
Sbjct: 114 KFAQPEKAPQSAITHWRSLATAELPVPVSRYQTSRYTLVELHPQSGRKHQLRRHMRH--- 170

Query: 516 LNAPIVGDDLYG-----------LQDKRLFLHAEQLSFAHPYTKQPMTFQVDAD 558
           L  PI+GD  +G               RL LHA  L+  HP T  P+  +   D
Sbjct: 171 LRHPIIGDTAHGDLRQNRSAAENFAMSRLMLHASALTLTHPITGAPLFLRAGLD 224