Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 217 a.a., bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA from Erwinia tracheiphila SCR3

 Score =  167 bits (423), Expect = 4e-46
 Identities = 100/219 (45%), Positives = 134/219 (61%), Gaps = 14/219 (6%)

Query: 349 NPAQGQDITIVYQDDAIVVVNKPAEFLSVPG--VHVHDSVLTRLKAQFTQAEGVFALHRL 406
           NP Q   + ++YQD  I+VVNKP+  LSVPG      DSV+TR++  F  AE V   HRL
Sbjct: 5   NPPQEPWLHVLYQDQHIIVVNKPSGLLSVPGRLAEHRDSVMTRIQQAFPAAESV---HRL 61

Query: 407 DMSTSGLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRP 466
           DM+TSG++V ALT+ A  +L++QF  R  QK YVA + G  ++ +G I LPL  D  +RP
Sbjct: 62  DMATSGVIVVALTKAAECELKRQFREREPQKTYVARVWGHPAKEKGLIDLPLICDWPNRP 121

Query: 467 RQKVCWQQGKPALTHWETVQ-VEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDL 525
           +QKVC++ GK A T ++ +     N  R+ L P TGR+HQLRVH    L L  PI+GD+ 
Sbjct: 122 KQKVCFETGKTAQTEFQVLDYAADNSARLQLKPLTGRSHQLRVHL---LALGHPILGDNF 178

Query: 526 YGLQD-----KRLFLHAEQLSFAHPYTKQPMTFQVDADF 559
           Y  +       RL LHAE L+  HP  +  MTF+  ADF
Sbjct: 179 YAHEQARAMAPRLQLHAEALTILHPAFQSAMTFRQPADF 217