Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 258 a.a., Pseudouridylate synthases, 23S RNA-specific from Enterobacter asburiae PDN3

 Score =  104 bits (259), Expect = 5e-27
 Identities = 79/233 (33%), Positives = 115/233 (49%), Gaps = 40/233 (17%)

Query: 356 ITIVYQDDAIVVVNKPAEFLSVPGVHVHDSVLTRLKAQFTQ-------AEGVFALHRLDM 408
           + I+YQD+ +V VNKP+ +L      VH S L R +             + VF  HRLD 
Sbjct: 3   LEILYQDEWLVAVNKPSGWL------VHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDR 56

Query: 409 STSGLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRPRQ 468
            TSG+L+  L+  A + L +QF    +QKRY A++ G L+E    +  PL  +LD    +
Sbjct: 57  PTSGVLLMGLSSEAGRLLSQQFEQHQMQKRYHAIVRGWLTEA-ATLDYPLVEELDKIADK 115

Query: 469 KVCWQQG-KPALTHWETVQVEQ-----------NRTRVYLYPHTGRTHQLRVHCAHHLGL 516
                +G +PA+T +  +   +             + V L P TGR HQLR H AH   L
Sbjct: 116 FARDDKGPQPAVTDYRGMATTEMPVATSKFPTTRYSLVELLPKTGRKHQLRRHLAH---L 172

Query: 517 NAPIVGDDLYG--LQDK---------RLFLHAEQLSFAHPYTKQPMTFQVDAD 558
             PI+GD  +G   Q++         RL LHA +LS  HP+T +P+T +   D
Sbjct: 173 RHPIIGDSKHGDLRQNRSAAEHFGCHRLMLHASELSLTHPFTGEPLTIRAGLD 225