Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 228 a.a., Pseudouridylate synthases, 23S RNA-specific from Enterobacter asburiae PDN3

 Score =  129 bits (324), Expect = 1e-34
 Identities = 85/224 (37%), Positives = 118/224 (52%), Gaps = 20/224 (8%)

Query: 350 PAQGQDITIVYQDDAIVVVNKPAEFLSVPGVHVH--DSVLTRLKAQFTQAEGVFALHRLD 407
           P    DI I++QD+ +++++KP+  LS+ G      DSV  RL   F    G   +HRLD
Sbjct: 11  PPCHDDIEILWQDEHLLLIDKPSGLLSLSGKKPQNLDSVHYRLVQTFP---GCTLVHRLD 67

Query: 408 MSTSGLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRPR 467
             TSGL+V A  +  N  L +QF  R+V+K Y AL+ G +   +G I  P+  D    P 
Sbjct: 68  FGTSGLMVVARNKAINAALCQQFSQRSVEKAYSALLCGHVENDEGVIDAPIAKDPALFPL 127

Query: 468 QKVCWQQGKPALTHWETVQ-----VEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVG 522
             +C   GKPA + +  V+          TRV L P TGRTHQLR+HC     L  PI+G
Sbjct: 128 MSICAINGKPARSRYRVVERFYQSTGLPLTRVILIPETGRTHQLRIHCQQ---LGHPILG 184

Query: 523 DDLYGLQD-------KRLFLHAEQLSFAHPYTKQPMTFQVDADF 559
            DLYG  +        RL LHA +L+F HP + +P+  +  A F
Sbjct: 185 CDLYGGLEAPGAEDAPRLMLHASELNFIHPVSGEPVNARHAAPF 228