Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 319 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Escherichia coli ECRC62

 Score =  107 bits (267), Expect = 7e-28
 Identities = 78/228 (34%), Positives = 113/228 (49%), Gaps = 17/228 (7%)

Query: 344 NPLLSNPAQGQDITIVYQDDAIVVVNKPAEFLSVPGVHVHDSVLTRLKAQFTQAEGVFAL 403
           +P L   A   D+ I+Y+DD I+V+NKP+      G  +   V+  L+A   +A  +  +
Sbjct: 82  SPHLQKVAALADV-ILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLELV 140

Query: 404 HRLDMSTSGLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGD-L 462
           HRLD  TSG+L+ A  R A + L +Q   + +QK Y+AL+ G+       +Q PL  + L
Sbjct: 141 HRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNIL 200

Query: 463 DDRPRQKVCWQQGKPALTHWETVQVEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVG 522
               R     Q+GKP+ T ++  +     T V   P TGRTHQ+RVH  +      PI  
Sbjct: 201 QSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQY---AGHPIAF 257

Query: 523 DDLYGLQD------------KRLFLHAEQLSFAHPYTKQPMTFQVDAD 558
           DD YG ++             RLFLHA  L F HP T + M  +   D
Sbjct: 258 DDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMD 305