Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 217 a.a., bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA from Dickeya dianthicola ME23

 Score =  174 bits (442), Expect = 2e-48
 Identities = 102/219 (46%), Positives = 138/219 (63%), Gaps = 14/219 (6%)

Query: 349 NPAQGQDITIVYQDDAIVVVNKPAEFLSVPG-VHVH-DSVLTRLKAQFTQAEGVFALHRL 406
           NP +   + I+YQD  I+VVNKP+  LSVPG    H DS++TR++A F  AE V   HRL
Sbjct: 5   NPPRDPWLHILYQDQHIMVVNKPSGLLSVPGRAEEHKDSIMTRIQADFPAAESV---HRL 61

Query: 407 DMSTSGLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRP 466
           DM+TSG++V ALT+ A ++L++QF  R  +K Y+A + G L    G + LPL  D  +RP
Sbjct: 62  DMATSGVMVVALTKAAERELKRQFREREPKKSYLARVWGHLPSDDGLVDLPLICDWPNRP 121

Query: 467 RQKVCWQQGKPALTHWETV-QVEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDL 525
           +QKVC++QGKPA T +  + +     TRV L P TGR+HQLRVH    L L  PI+GD  
Sbjct: 122 KQKVCFEQGKPAQTGYTVLSRGSDGTTRVKLMPITGRSHQLRVHM---LALGHPILGDGF 178

Query: 526 YG-----LQDKRLFLHAEQLSFAHPYTKQPMTFQVDADF 559
           Y      +   RL LHA++L+ AHP    PM F+ +ADF
Sbjct: 179 YAHPQAKVMAPRLLLHAQELAIAHPAFNTPMHFRCEADF 217