Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 217 a.a., bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA from Dickeya dadantii 3937

 Score =  172 bits (437), Expect = 9e-48
 Identities = 100/219 (45%), Positives = 138/219 (63%), Gaps = 14/219 (6%)

Query: 349 NPAQGQDITIVYQDDAIVVVNKPAEFLSVPG-VHVH-DSVLTRLKAQFTQAEGVFALHRL 406
           +P +   + I+YQD  I+VVNKP+  LSVPG    H DS++TR++A F  AE V   HRL
Sbjct: 5   DPPRDPWLHILYQDQHIMVVNKPSGLLSVPGRAEEHKDSIMTRIQADFPAAESV---HRL 61

Query: 407 DMSTSGLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRP 466
           DM+TSG++V ALT+ A ++L++QF  R  +K Y+A + G L +  G + LPL  D  +RP
Sbjct: 62  DMATSGVMVVALTKAAERELKRQFREREPKKSYIARVWGHLEQDDGLVDLPLICDWPNRP 121

Query: 467 RQKVCWQQGKPALTHWETVQVEQN-RTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDL 525
           +QKVC++QGKPA T +  +  + +  TRV L P TGR+HQLRVH    L L  PI+GD  
Sbjct: 122 KQKVCFEQGKPAQTGYVVLSRDSDGTTRVKLMPITGRSHQLRVHM---LALGHPILGDGF 178

Query: 526 YG-----LQDKRLFLHAEQLSFAHPYTKQPMTFQVDADF 559
           Y          RL LHA++L+  HP    PM F+ +ADF
Sbjct: 179 YAHPQAKAMAPRLLLHAQELAIVHPAFNTPMHFRCEADF 217