Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 325 a.a., 23S rRNA pseudouridine(1911/1915/1917) synthase RluD from Dickeya dadantii 3937

 Score =  100 bits (249), Expect = 8e-26
 Identities = 73/216 (33%), Positives = 108/216 (50%), Gaps = 26/216 (12%)

Query: 351 AQGQDITIVYQDDAIVVVNKPAEFLSVPGVHVHD-SVLTRLKAQFTQAEGV---FALHRL 406
           AQ   + IVY+D+ I+V+NKP + +  PG    D +VL  L   + +   V     +HRL
Sbjct: 79  AQPISLDIVYEDEDILVINKPRDLVVHPGAGNPDGTVLNALLHHYPEIVDVPRAGIVHRL 138

Query: 407 DMSTSGLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRP 466
           D  T+GL+V A T  A  +L +   +R + + Y A+  G ++   G ++ P+      R 
Sbjct: 139 DKDTTGLMVVAKTVPAQTRLVESLQAREITREYEAVAIGTMT-AGGTVEEPIARHSTKRT 197

Query: 467 RQKVCWQQGKPALTHWETVQVEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDLY 526
              V    GKPA+TH+  ++  +  TR+ L   TGRTHQ+RVH AH   +N P+VGD LY
Sbjct: 198 HMAV-HPMGKPAVTHYRIMEHFRAHTRLRLRLETGRTHQIRVHMAH---INHPLVGDPLY 253

Query: 527 GLQDK-----------------RLFLHAEQLSFAHP 545
           G + +                 R  LHA  L   HP
Sbjct: 254 GGRPRLPKGASEAFIETLRNFDRQALHATMLRLYHP 289