Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 260 a.a., tRNA(Ile1,Asp) pseudouridine(65) synthase from Escherichia coli BL21

 Score =  109 bits (273), Expect = 1e-28
 Identities = 85/235 (36%), Positives = 117/235 (49%), Gaps = 44/235 (18%)

Query: 356 ITIVYQDDAIVVVNKPAEFLSVPGVHVHDSVLTRLKAQFTQ-------AEGVFALHRLDM 408
           + I+YQD+ +V VNKP+ +L      VH S L R +             + VF  HRLD 
Sbjct: 2   LEILYQDEWLVAVNKPSGWL------VHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDR 55

Query: 409 STSGLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRPRQ 468
            TSG+L+  L+  A + L +QF    +QKRY A++ G L E +  +  PL  +LD    +
Sbjct: 56  PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADK 114

Query: 469 KVCWQQG-KPALTHWE---TVQVEQNRTR--------VYLYPHTGRTHQLRVHCAHHLGL 516
                +G +PA+TH+    TV++     R        V L P TGR HQLR H AH   L
Sbjct: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAH---L 171

Query: 517 NAPIVGD-------------DLYGLQDKRLFLHAEQLSFAHPYTKQPMTFQVDAD 558
             PI+GD             + +GLQ  RL LHA QLS  HP+T +P+T     D
Sbjct: 172 RHPIIGDSKHGDLRQNRSGAEHFGLQ--RLMLHASQLSLTHPFTGEPLTIHAGLD 224