Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 352 a.a., Ribosomal large subunit pseudouridine synthase D from Azospirillum sp. SherDot2

 Score = 95.1 bits (235), Expect = 4e-24
 Identities = 76/236 (32%), Positives = 108/236 (45%), Gaps = 35/236 (14%)

Query: 351 AQGQDITIVYQDDAIVVVNKPAEFLSVPGVHVHDSVLTR--LKAQFTQAEGVFAL----- 403
           AQ   + +VY+D  ++V++KPA  +  P     D  L    L        G+  +     
Sbjct: 103 AQDIPLDVVYEDADVLVIDKPAGLVVHPAAGNPDGTLVNALLAHCGDSLSGIGGVRRPGI 162

Query: 404 -HRLDMSTSGLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDL 462
            HRLD  TSGL+V A   RA+  L  QF  R + + Y+AL+ G  + TQG I+  +    
Sbjct: 163 VHRLDKDTSGLMVVAKNDRAHHGLSDQFADRTLSRTYLALVWGVPNPTQGRIEGNIGRSS 222

Query: 463 DDRPRQKVCWQQGKPALTHWETVQ-VEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIV 521
            DR +  V    GKPA T +  V+      + V     TGRTHQ+RVH  H   +  P+V
Sbjct: 223 ADRKKMAVVTGGGKPAGTKYRVVKSFGMAASLVECVLETGRTHQIRVHLTH---IGHPLV 279

Query: 522 GDDLYG-------------LQDK----------RLFLHAEQLSFAHPYTKQPMTFQ 554
           GD LYG             L D+          R  LHA  L+F HP + + + F+
Sbjct: 280 GDPLYGRGRSGRPGGKFASLLDEPVRSSLVGFPRQALHAAALTFRHPVSGEIVAFR 335