Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 238 a.a., Ribosomal large subunit pseudouridine synthase A from Alteromonas macleodii MIT1002

 Score =  150 bits (378), Expect = 7e-41
 Identities = 90/223 (40%), Positives = 132/223 (59%), Gaps = 18/223 (8%)

Query: 349 NPAQGQDITIVYQDDAIVVVNKPAEFLSVPG--VHVHDSVLTRLKAQFTQAEGVFALHRL 406
           NP     +  +YQD+ +VV +KP+  LSVPG  +   DS+++R+   +  A  V   HRL
Sbjct: 9   NPPMTPYLDFLYQDEDMVVAHKPSGLLSVPGKALEHRDSLISRVNRVYPTATVV---HRL 65

Query: 407 DMSTSGLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRP 466
           DM+TSG+LV AL + +++ + KQF  R  +KRY A + G + +  GE+ LPL  D  +RP
Sbjct: 66  DMATSGILVLALNKDSHRHISKQFELRQTKKRYFARVHGHVEQDSGEVNLPLICDWPNRP 125

Query: 467 RQKVCWQQGKPALTHWETV-----QVEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIV 521
           +Q V +++GK A+TH++ +     + E+  + V LYP TGR+HQLRVH    L L  PI+
Sbjct: 126 KQMVDFERGKKAVTHFDVIERTLDEKERPYSLVALYPITGRSHQLRVHM---LALGHPIL 182

Query: 522 GDDLYGLQD-----KRLFLHAEQLSFAHPYTKQPMTFQVDADF 559
           GD LY  ++      RL LHAE LS +HP     + F V   F
Sbjct: 183 GDRLYAHEEALSMAPRLQLHAESLSLSHPTLGHWLHFNVAIPF 225