Pairwise Alignments

Query, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 214 a.a., Dual-specificity RNA pseudouridine synthase RluA from Acinetobacter radioresistens SK82

 Score =  135 bits (341), Expect = 1e-36
 Identities = 87/213 (40%), Positives = 118/213 (55%), Gaps = 18/213 (8%)

Query: 358 IVYQDDAIVVVNKPAEFLSVPGVH--VHDSVLTRLKAQFTQAEGVFALHRLDMSTSGLLV 415
           ++++D+  +V++KP+  LSVPG    + DSVLTRL A   +      +HRLD  TSG+LV
Sbjct: 9   LIHRDEDFMVIHKPSGILSVPGKGEALSDSVLTRLVAIEPKT---LLIHRLDRDTSGILV 65

Query: 416 FALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRPRQKVCWQQG 475
           F L+RR    + +QF  R   K Y AL+ G L + +G + +P+  D    P         
Sbjct: 66  FGLSRRGQNSIARQFQERQTTKTYQALVAGHL-QGEGTVDVPVVYDPAHPPLHIADAHHN 124

Query: 476 KPALTHWETVQV----EQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDLYGLQDK 531
           KPALTHW+ ++      Q  TRV L P TGR+HQLRVH  +   L   IVGD LY   ++
Sbjct: 125 KPALTHWQAIEQFEINGQQVTRVKLVPVTGRSHQLRVHMQY---LGHAIVGDTLYADLEQ 181

Query: 532 -----RLFLHAEQLSFAHPYTKQPMTFQVDADF 559
                RL LHAEQL FAHP T + + F     F
Sbjct: 182 QQLMPRLCLHAEQLGFAHPQTGEALNFYCPVPF 214